Hvir008662.1
Basic Information
- Insect
- Heliothis virescens
- Gene Symbol
- -
- Assembly
- GCA_002382865.1
- Location
- NWSH01000104.1:192049-205093[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.7e-06 0.0037 16.7 0.0 7 35 46 73 42 78 0.88 2 2 0.0096 5.3 6.6 0.0 4 34 207 236 204 247 0.86
Sequence Information
- Coding Sequence
- ATGGACCACGGGATACCGCTTAACATCCACGCACGACCGCGCTTAGTGGGACGCAGGCCTAACGAGATCGTCAACATAGAAACCGATGTTTTTCAAGAGAAATCTTACAAGCAGTATTCGTCGCAACATTTGAGAGATGCCCTTATAGCTGTGAAGAAAGGATACAGTGTATACGCCGCTTCGAATAAGTATGGGGTACCAAGAAAGACTTTGCGGAATTGGATGGAAAAGTACGATATAAAGAGCCAATTTTCTAAAGAGTTCCCGATAGCAAACGTGCAGTGTCAGTACGACAGCCCCTCCGACACCGAGCCGGAGCGGGCCGGGGGAGGGGACCCGCCCGCAGGGGAGGGGGGGCCCGCCAGGCCGCCTGCTGACCACACGTATGACACCCGCGATGAGCCGCCTGCCTTTATTATACGACATGTTAATAACGCGCTACACCTACAAAGCCCGCCGCACTTCCGTGAGATCAGGCCCAAGATCATGACGATAGGGCCGGTCCTTCGCCCCTCATCCGCCTCCGTCAACGTCATACATGTCGGGGATCAGGCGCAGAGCGTGTCCTCCCCCCCCATGGAGTACAGCATGAACAAGCGCATCAGGCGCAGCGAGGTGGAGCTCCGCCAGGCCGCCGACTGCGTCAGCCGCGGACTCACCTTCCAGACCGTCTCCGAGCAGTTCAATATACCCATCTCTACTATACGattttttatggcGCGGAAAGGCATTCTACCTCGACGTAGAAGAGGACGAAGTACGGCGCCAAATAGACCATGCAGCAGTCCCGAGCCCCCCTTCCATATGCAGCACTTCAAGCTACCCGACATGGTAGCTCTCAGGGCAGATGACGAAGACCCTCCCGCGCTGTAG
- Protein Sequence
- MDHGIPLNIHARPRLVGRRPNEIVNIETDVFQEKSYKQYSSQHLRDALIAVKKGYSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKEFPIANVQCQYDSPSDTEPERAGGGDPPAGEGGPARPPADHTYDTRDEPPAFIIRHVNNALHLQSPPHFREIRPKIMTIGPVLRPSSASVNVIHVGDQAQSVSSPPMEYSMNKRIRRSEVELRQAADCVSRGLTFQTVSEQFNIPISTIRFFMARKGILPRRRRGRSTAPNRPCSSPEPPFHMQHFKLPDMVALRADDEDPPAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01084198;
- 90% Identity
- iTF_00785142;
- 80% Identity
- -