Hzea008056.1
Basic Information
- Insect
- Helicoverpa zea
- Gene Symbol
- sip1
- Assembly
- GCA_002150865.1
- Location
- KZ118624.1:1-12617[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5e-34 4.8e-30 105.2 1.9 2 169 366 514 365 519 0.95 2 3 5.1e-06 0.049 13.3 0.7 134 169 517 547 513 552 0.87 3 3 3.3e-30 3.1e-26 92.7 0.5 134 275 550 687 547 687 0.95
Sequence Information
- Coding Sequence
- ATGTCGGACGACGAAGTAATGCGTTTCGAGATTACCGATTATGATTTAGATAATGAATTTAATCCGAATAGAAACAGGAGGGCCAAAAAGGAACATCAGATATACGGTGTATGGGCCAAAGACAGTGATGAGGATGATAATGAAGACAATATTAGGCAAAGATCTCGCAAGCCTAAAGACTTCTCAGCACCCATTGGCTTTGTGGCCGGAGGAGTACAACAGGCTGGAAAGAAAAAGGAAGAAAGTAAAGAAATAGAATCATCAGAAGCTGGGACATCGCGCCCCAAGTTTGCAGACAGCTCTGATGAAGAGGAACAGAATGCCCCGGATGCCAGTGAGACGGCTGGCATCAGGAGACAGGGGCAAGGCATGCGGCCGGTCAACCTCGGTGGCAATGTGGGCACTTGGGAGAAACACACCAAGGGTATTGGTGCCAAGCTGTTGTTGAAGATGGGTTACCAACCGGGCATGGGTTTGGGTAAAGATCTGCAGGGTATCTCAGCACCAGTCGAGGCTACTGTCAGAAGAGGAAGGGGTGCTATCGGGGCTTATGGACCTGAGAAAGCAGCACAAAAAGCCAAAAAAGAAGAAGAGCTGCGCAAACTGAAAGAGAAAGAAGAAGAGAAAGGCACTAAAGAGAAGACTTATAACTGGAAGAAGTCGCACAAGGGGCGCTACTTCTACCGCGACGCCGCCGACGTCATACAAGAGGGTAAACCCACGATGCATACTATTACCAGCAACGAGCTGTCCCGGGTACCCGTGATCGACATGACGGGCAAGGAGAAGCGCGTGCTGAGCGGCTACCACGCGCTGCGGGCGGCGGCGCCGCGCTTCGAGCACGAGCCGCGACGCAAGTGCCACTACTTCGCCGCGCCACAGCTCGCGCATAATCTGCAGCTCATGGTGGAGTGTTGTGAGCAGGACATAATCCAAAACGCCCGTGAGCTTCAAACAGCGGAAGACGAGATAGTAGTCATAGAGCGAGACTTAGAAGACTGCAACATTAAGCTGCAGGAACAAGATAAAGTTATCAATAAGGTTGAGGACATTCTGCAGCGAGTCGAGATGTTGAACAAACCTGATGTGTCGTTAGAGACTGCGCATGATGTGCTTGCTGAGTTGAAGGAATCCTACCCCCTAGAATACGAGATGTTCGGCCTAGGCACAATTGCTGGCAACATCGTGAGTCCCTTACTCAGTTCGATGATAGCAGCCTGGGATCCGTTGCAAGTACCTGATGAACCCATACCCACCTTCCTGAAGTGGAGGAAACTGCTGACTGAAGAGGCGTATAATAGTTTGTTGTGGCAACATTATATACCGCAGTTGACGGCTGCTGCTGAATCATGGAACCCCCGCTCCCCAACCAAGATGCTTCAGGCAGTGACTCTGTGGCAGCCGGCCTGCCCGGGCTGGGTGTCGGGCGCCGGCGTGGCCCGCGCCGTGCTGCCGCGCCTGCTGGCCGCCGTCCGCGCCTGGGACCCCACCCACGACACCCTGCCGCTGCACACCTGGGTGCTGCCCTGGCATGACATCGCAGGTATAACTGTTGAACTCTCTGCCGCCGTCCGCGCCTGGGACCCCACCCACGACACCCTGCCGCTGCACACCTGGGTGCTGCCCTGGCATGACATCGCAGGTATAACTGTTGAACTCTCTGCCGCCGTCCGCGCCTGGGACCCCACCCACGACACCCTGCCGCTGCACACCTGGGTGCTGCCCTGGCATGACATCGCAGGTGAAGCACTAGCCAGTTCAGTGTACCCCCTCATCCGGTCCCGCCTCGCCGCGGCACTGTCAGCGTGGCACCCCGCGGACTCGTCAGCGCGCGGGGTGCTGGGCGCGTGGGCCGCCGCGTGGGGCCCGGCGCTGGGGGCCCTGCTGCACCAGCACATCGTGCCCAAGCTAGACCACTGTTTGCAGCACGCGCCGCTCGAGCTCGTCGGCAGAGAGAACACGGCGTGGCTGTGGTGCGTGGAGTGGCTGGAGCTGCTGGGCGCGAGCACGGTGGCGGCGCtggcggcgcgggcgctgcTGCCGCGCTGGCTGGCGGCGCTGGCGGCCTGGCTCAACACCAACCCGCCACACGCTACCGTGCTCAACTCTTATACTGATTTTAAGAAAATGTTTCCCGAAGAAGTGCTAAAAGAACCAGCGGTGCGTGACGCCTTCCGCAAAGCATTGGACATGATGAACCGAAGCGCTGACTTAGAGTCCGTCGAACCACCTCCTCCGCCCCGCTTCACTATGCCCGAGCCTAAGGAAACTTCTAGAATCGCTGACGTCATTGCCTCAGCAACCCAAGCGAAATCCTTCTCAGAACTACTCGAAACGAGGTGCATCGAAAAAGGCATTACCTTCGTACCTATTGCCGGTAAAACCAGGGAAGGAAGACCGTTGTACAAGATAGGAGAATTGCAGTGTTATGTAATAAGAAATGTGATCATGTATTCTAATGATAGTGGCAGGACTTTCAGCCCCATTAGCATGGATAAACTTCTAAGTATGGTCGAAGATTAA
- Protein Sequence
- MSDDEVMRFEITDYDLDNEFNPNRNRRAKKEHQIYGVWAKDSDEDDNEDNIRQRSRKPKDFSAPIGFVAGGVQQAGKKKEESKEIESSEAGTSRPKFADSSDEEEQNAPDASETAGIRRQGQGMRPVNLGGNVGTWEKHTKGIGAKLLLKMGYQPGMGLGKDLQGISAPVEATVRRGRGAIGAYGPEKAAQKAKKEEELRKLKEKEEEKGTKEKTYNWKKSHKGRYFYRDAADVIQEGKPTMHTITSNELSRVPVIDMTGKEKRVLSGYHALRAAAPRFEHEPRRKCHYFAAPQLAHNLQLMVECCEQDIIQNARELQTAEDEIVVIERDLEDCNIKLQEQDKVINKVEDILQRVEMLNKPDVSLETAHDVLAELKESYPLEYEMFGLGTIAGNIVSPLLSSMIAAWDPLQVPDEPIPTFLKWRKLLTEEAYNSLLWQHYIPQLTAAAESWNPRSPTKMLQAVTLWQPACPGWVSGAGVARAVLPRLLAAVRAWDPTHDTLPLHTWVLPWHDIAGITVELSAAVRAWDPTHDTLPLHTWVLPWHDIAGITVELSAAVRAWDPTHDTLPLHTWVLPWHDIAGEALASSVYPLIRSRLAAALSAWHPADSSARGVLGAWAAAWGPALGALLHQHIVPKLDHCLQHAPLELVGRENTAWLWCVEWLELLGASTVAALAARALLPRWLAALAAWLNTNPPHATVLNSYTDFKKMFPEEVLKEPAVRDAFRKALDMMNRSADLESVEPPPPPRFTMPEPKETSRIADVIASATQAKSFSELLETRCIEKGITFVPIAGKTREGRPLYKIGELQCYVIRNVIMYSNDSGRTFSPISMDKLLSMVED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00450133;
- 90% Identity
- iTF_00907064;
- 80% Identity
- -