Hzea018407.1
Basic Information
- Insect
- Helicoverpa zea
- Gene Symbol
- -
- Assembly
- GCA_002150865.1
- Location
- KZ117462.1:8751-10845[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-08 1.2e-05 25.0 0.1 2 43 15 56 14 58 0.91 2 2 1.9 1.3e+03 -0.7 0.0 25 37 266 278 265 283 0.79
Sequence Information
- Coding Sequence
- ATGCCtcgtacttatttaaaaaagaaaaataagtcaTACTCTCCTCAAGATTTAGCCACTGCCATACAGCAGGTAAGAAACAGGGAGCTTACCGCATATGCTGCTGCACAGAAGTACAAGATACCAATGACCACTCTTCATGACCATGTCAAAACTAAAGACACTAGGCAGAATGCAGGTAGACCCAAATCATTTAAAGCAATATGGGATGCAAAACTGGTAGAGTGGCAGAGAAGAAACGTTGGTACGAAAATGCCAAGAAACGTTTTCGCACAAACTATGGCAGATACTTGGCAACAAACGAACCCCGAAGTTATAAAGAGTGGATTTAAAAAGGCTGGAATATACCCTTTTAATGCACATGTCATACCTATTGACAAATATGATCCAGACGCGTATCAAAGATACAAGAAAACTTTGCTTGCCCGCACACTCAAACAGCCAAAGTCACTCAAAGAAATATGCATTGAATCATTCAACAATCAGTTTGCAACAGTTAatgaaactattgaaataaCAGGCAATAATTACGTTGCCTTGCTATCTGCACAATCAAGAAATAATGCCCAAATGATGCCTTTTGAAGCCAGACACCCGAGCCAAGTACCAGCATGTTTGCAGAACTCGAAGCCaacaaaatccaaaataaatataatatcaaactaCCAGGAGGAGACAAGTTTACAGAAATCAAGAAAAGATAGGAAGTGTGTTATGAAGATGAAGAAAAACGATAAAAACATCACCAGTGAAAAGGCACTCGCTGACAAAAAAAAGTGCCCCGTTGTAAGGGAACGTTATGATTTAAATGATACAGTGCTTGTCAggtattttataagaaacaaaTGGAAATATTATGTTGGGTTCATACAAAACATAAGCAAACATGAAGAACAACTGTACTTTATCGACTTCTTAAAAACGTCCAGAAGACAGCAACATCTCAGTTTTGTTGAACCTAAAAAGAAAGATACGGACCAAGTTCCAGAGTCATTTGTAGTAAAGAAAATAGAATTACAGAAAAAACGAGATCAAGACAAAGAATATTACTTGACCCATGATGAAGACACTATTTATTTCGACTGA
- Protein Sequence
- MPRTYLKKKNKSYSPQDLATAIQQVRNRELTAYAAAQKYKIPMTTLHDHVKTKDTRQNAGRPKSFKAIWDAKLVEWQRRNVGTKMPRNVFAQTMADTWQQTNPEVIKSGFKKAGIYPFNAHVIPIDKYDPDAYQRYKKTLLARTLKQPKSLKEICIESFNNQFATVNETIEITGNNYVALLSAQSRNNAQMMPFEARHPSQVPACLQNSKPTKSKINIISNYQEETSLQKSRKDRKCVMKMKKNDKNITSEKALADKKKCPVVRERYDLNDTVLVRYFIRNKWKYYVGFIQNISKHEEQLYFIDFLKTSRRQQHLSFVEPKKKDTDQVPESFVVKKIELQKKRDQDKEYYLTHDEDTIYFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00783386;
- 90% Identity
- -
- 80% Identity
- -