Hass006855.1
Basic Information
- Insect
- Helicoverpa assulta
- Gene Symbol
- -
- Assembly
- GCA_029618815.1
- Location
- CAWLCW010000007.1:4433497-4434795[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.5e-09 3.7e-06 27.4 0.0 1 37 14 50 14 58 0.89 2 2 7.4 2.9e+03 -1.1 0.0 25 37 337 349 336 353 0.79
Sequence Information
- Coding Sequence
- ATGCCtcgtacttatttaaaaaagaaaaataagacatACACTCCTCAAGATTTAGCCACTGCCATACAGCAGGTAAGAAACGGGGAGCTTACCGCATATGCTGCTGCACAGAAGTACAAGATACCAATGACCACTCTTCATGACCATGTCATAACTAAAGACACTAGGCAGAATGCAGGTAGACCCAAATCATTTAAAGCAATATGGGATGCAAAACTGGTAGAGTGGCAGAGAAGAAACGTTGGTACGAAAATGCCAAGAAACGTTTTCGCACAAACTATGGCAGATACTTGGCAACAAACGAACCCCGAAGTTATAAAGAATGGATTTAAAAAGGCTGGAATATACCCTTTTAATGCACATGTCATACCTATTGACAAATATGATCCAGACGCGTATCAAAGATACAAGAAAACTTTGCTTGCCCGCACACTCAAACAGCCAAAGTCACTCAAAGAAATATGCATTGAATCATTCAACAATCAGTTTGCAACAGTTAATGAAACTATTGAAATAACAGGCAATAATTACGTTGCCTTGCTATCTGCACAATCAAGAAATAATGCCCAAATGATGCCTTTTGAAGCCAGACACCCCAGCCAAGTACCAGCATGTTTGCAGAATTCGAAGCCAACaaaatccaaaataaatataatatcaaaCTACCAGGAGGAGACAAGTTTACAGAAATCAAGAAAAGATAGGAAGTGTGTTATGAAGATGAAGAAAAACGATAAAAACATCACCAGTGAAAAGGCACTCGCTGACAAAAGTACAAATAATGCATGTTCTAAGAAAGGCAAAGGTGTTGGGAAGAAAAGCAAAGGTAAAGAAAATCAGATAGACAAAAATGAAGGAATCAGTTATTTTGCAACAGGTGAAGAAGACGTAAATGAGCAGATTGCAGAATATCCTAAAGAAACCCAAACCTGTAAATTACAGCCACCAGGAACAGAGAATAAAGAATTAGCATGTGGAATTCCAGAAAAGTGCCCCGTTGTAAAGGAACGTTATGATTTAAATGATACAGTGCTTGTCAGGTATTTTATAAGAAACAAATGGAAATATTATGTTGGGTTCATACAAAACATAAGCAAACATGAAGAACAACTGTACTTTATCGACTTCTTAAAAACGTCCAGAAGACAGCAACACCTCAGTTTTGTTGAACCTAAAAAGAAAGATACGGACCAAGTTCCAGAGTCATTTGTAGTAAAGAAAATAGAATTACAGAAAAAACGAGATCAAGACAAAGAATATTACTTGACCCATGATGAAGACACTATTTATTTCGACTGA
- Protein Sequence
- MPRTYLKKKNKTYTPQDLATAIQQVRNGELTAYAAAQKYKIPMTTLHDHVITKDTRQNAGRPKSFKAIWDAKLVEWQRRNVGTKMPRNVFAQTMADTWQQTNPEVIKNGFKKAGIYPFNAHVIPIDKYDPDAYQRYKKTLLARTLKQPKSLKEICIESFNNQFATVNETIEITGNNYVALLSAQSRNNAQMMPFEARHPSQVPACLQNSKPTKSKINIISNYQEETSLQKSRKDRKCVMKMKKNDKNITSEKALADKSTNNACSKKGKGVGKKSKGKENQIDKNEGISYFATGEEDVNEQIAEYPKETQTCKLQPPGTENKELACGIPEKCPVVKERYDLNDTVLVRYFIRNKWKYYVGFIQNISKHEEQLYFIDFLKTSRRQQHLSFVEPKKKDTDQVPESFVVKKIELQKKRDQDKEYYLTHDEDTIYFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00784340;
- 90% Identity
- -
- 80% Identity
- -