Hass022151.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Helicoverpa assulta
Gene Symbol
-
Assembly
GCA_029618815.1
Location
CAWLCW010000025.1:3341787-3352198[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.12 10 7.6 1.2 1 23 233 255 233 255 0.95
2 16 5.8 5.1e+02 2.3 0.1 2 23 284 306 283 306 0.84
3 16 0.61 53 5.4 0.2 3 23 328 349 326 349 0.90
4 16 0.00035 0.031 15.6 2.6 2 23 355 377 354 377 0.95
5 16 0.0018 0.16 13.3 1.1 1 23 382 405 382 405 0.96
6 16 0.18 16 7.0 0.4 2 23 408 430 407 430 0.95
7 16 0.062 5.5 8.5 2.1 2 21 437 456 436 457 0.93
8 16 0.0013 0.11 13.8 1.0 1 23 517 540 517 540 0.93
9 16 0.15 13 7.3 0.4 3 23 569 590 567 590 0.94
10 16 0.12 10 7.6 0.8 3 23 614 636 612 636 0.95
11 16 0.00058 0.051 14.9 0.6 3 20 643 660 641 664 0.90
12 16 0.0047 0.41 12.0 0.4 1 23 669 692 669 692 0.97
13 16 0.00088 0.078 14.3 0.4 2 23 698 720 698 720 0.94
14 16 0.0007 0.062 14.6 4.8 1 23 724 747 724 747 0.97
15 16 0.0018 0.16 13.3 0.5 2 23 754 775 753 775 0.96
16 16 0.0051 0.45 11.9 2.3 1 23 781 803 781 803 0.97

Sequence Information

Coding Sequence
ATGATGGAGTTTGACGAGATTGTGGTGAAGGAGAGCCCCGGGCTTTGCCGGTGCTGTCTCTCCGAAGGCTGCTACAAAGATTTGGGTACTGAGTACACTTGGATGAATGAAACAGAGGTTTATGCTGATATGCTGCTAGAATGTTTCGATATTAGTATTACTCAACACAACGATGGTCCGAACGGCCCAAACCGGCTTATTTGCGAAGTTTGCATCACCAGGCTCCGAGATGCGTGTAATTTTAAGAAACAAGTATTGGACTCGGAGAAGAAATTCATTGATATGATGGGGAGAGGAGAATTTAGGCCTAAGATGCTAATCTACCAGGCACAGATGAAATGTGAAGACCCAGTGGAAGCCACCATTGAGGAAGCAGACATTGAATATTTAGAAGACGACATTGATTTTACTGACGTTCCAGAAGAATTAATAAAAGATGAAACGGAACCGTCAGTGTCAGACATAACAGTCTCCACGTTACCAGTGAAAGGCAAGCGGGGTCGACCCCGGAAGAACGCTGTCAAGCCGGAGAAGAGACAGAAGGTTGATGATAAGCCCAAGACTTCGAAGGCTGTTGCTAAAGGTAGTAAACCGAGGAAATTGACGGGATCCGAGTCTTCCTCGATGCGGAGACGTCGAAATCTCCAAATTATATTCAACAACACCTCTATAATCCCGTTTAAATGGCGCGGCAAGTATCTCTGCTTTTACTGCAGCAAAGATATCGCAGAATATACAGAGTTGAGGAAACATACCAAATCACATGGCAACTGCTCTATAAAAGACCATTCGCTAAAAGTTCTGAAAGGAGGTCAAAACATGGAGATAAAAGTCGATATCTCGAATATTTCTTGCGAGATCTGTACGGAGCCTTTTCTGTCCTTCGATGAGGTTGTAACACATTTGTTCGTTAAACACAAACTTGAGTACGACAAAGGAGTGGATATGGCTATAGAAGAATATAAGCTAGTTGATCTTAGCTGTATTGGGTGCGAAGAGAAATTCACTTACTTCGGATATCTTGTCTCACACGTAAACAACAACCATCCGAAAAATTGTCTTATATGTGACAAATGCAATCAGAAATTCAATAAGAAGAGAGACTTATTTTCTCATATGAAGAACTATCATCGAGAAGGAGGATACCAATGTGAACTGTGCCCTCAGACTTTCAGTTCATTGAATATTCTAAGGAAACATAGAAATAACAGGCATCTGACTAGATGTAACATTTGTCACTTAAAACTACCTTCCGCAGCtttgaaacaaaaacatatcGAAATAGAACACCCAGACGACGGATCTTTACAATGTGATACGTGTTTCAAAGAATTCCACACAAAACAAGGCCTAAGGATGCACAACAGAAAATGCAAAGGAGAAGAGATTTTCGAAATCGCAATCAAAAAAGAAGAATACGTTGCTATGGATCTCGATCAGAACTACGACGATCAAGTGAAAAGACCGAGCGTCAAGCAAATCCGGGAGAATATAGTTATAGTCATTAACATGTCTACGGCGAtaccttttaatttttataagaataagtttaattgtttttattgctcCAAAGATTTTTCCGATTCCGATTCGATGAGAGAACATACAGTTATGGAACACCCCGTGTGTGATATCAAAGAAAAATGTATTAGAAAGTGTAGGGAATCAGTCGCTTGCGTTAAAATCGATATTTCCTCCCTAGCTTGTAAAATCTGCTTCGAATCCATGACCGATTTGGAACACCTACTCGATCATCTAATCTCTAAACATAATGCGAATTACGATAAATCGATAACCACTTGTCTACAGCCTTATAAACTTATAAAAGACCATATGGCTTGCCCACACTGTCCCGACGAAGAATTTCGATTCTTCGGCACTTTACTGAAACatatgaataacaaacatacgaacaataatattatttgcgtTTACTGCGGTCAGACTTTCCGTAGGGACCAGAATTTACGTGTACATATTTGGCGTCATCATAGAGATGGGAGGTTTAAGTGTAATATTTGCGGTGCTGAATGCAAAATCCCTTCTCGTCTGTACATGCATATGGCTAGAGCACACGGCGTAAAAGCCGCTAAATGCCCAAAATGTTCAGAATCCTTCGCTACACAGTATCTAAGGCAGAAACATTTGATAGAAGCTCACGATTCGGGACATAAGTGCTCGTTTTGTGGCAAACTTTTTACAAGGAACTCCTTTATGAGAGATCATGTAAGGAGGACGCATTTGAAGGAGAAGAATGTGGAATGTTCCATCTGTAATATGAAGTTCTTCAATGATATCTTATTAAGAAGGCATATGGTTAAGCATAGTGGTGAAAAGAATTTCCACTGTGATGTCTGCGGAGAGCGGTTTTTCTGGAGAAAAAGTTTGAGGACGCATATGGCTAGgcataataaacatttaaatcctGTTTAG
Protein Sequence
MMEFDEIVVKESPGLCRCCLSEGCYKDLGTEYTWMNETEVYADMLLECFDISITQHNDGPNGPNRLICEVCITRLRDACNFKKQVLDSEKKFIDMMGRGEFRPKMLIYQAQMKCEDPVEATIEEADIEYLEDDIDFTDVPEELIKDETEPSVSDITVSTLPVKGKRGRPRKNAVKPEKRQKVDDKPKTSKAVAKGSKPRKLTGSESSSMRRRRNLQIIFNNTSIIPFKWRGKYLCFYCSKDIAEYTELRKHTKSHGNCSIKDHSLKVLKGGQNMEIKVDISNISCEICTEPFLSFDEVVTHLFVKHKLEYDKGVDMAIEEYKLVDLSCIGCEEKFTYFGYLVSHVNNNHPKNCLICDKCNQKFNKKRDLFSHMKNYHREGGYQCELCPQTFSSLNILRKHRNNRHLTRCNICHLKLPSAALKQKHIEIEHPDDGSLQCDTCFKEFHTKQGLRMHNRKCKGEEIFEIAIKKEEYVAMDLDQNYDDQVKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFSDSDSMREHTVMEHPVCDIKEKCIRKCRESVACVKIDISSLACKICFESMTDLEHLLDHLISKHNANYDKSITTCLQPYKLIKDHMACPHCPDEEFRFFGTLLKHMNNKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCNICGAECKIPSRLYMHMARAHGVKAAKCPKCSESFATQYLRQKHLIEAHDSGHKCSFCGKLFTRNSFMRDHVRRTHLKEKNVECSICNMKFFNDILLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHMARHNKHLNPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00071771;
90% Identity
iTF_00785433;
80% Identity
-