Hass010809.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Helicoverpa assulta
Gene Symbol
-
Assembly
GCA_029618815.1
Location
CAWLCW010000011.1:8827002-8838254[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 6.1e-05 0.0054 18.0 7.9 1 23 190 212 190 212 0.98
2 13 2.3e-06 0.0002 22.5 0.9 3 23 226 246 225 246 0.97
3 13 5.7e-05 0.0051 18.0 2.1 2 23 255 276 255 276 0.98
4 13 2.4e-05 0.0021 19.2 1.5 3 23 284 304 282 304 0.95
5 13 1.8e-05 0.0016 19.6 1.4 1 23 310 332 310 332 0.98
6 13 1.8e-05 0.0016 19.6 8.6 2 23 339 360 338 360 0.97
7 13 2.4e-05 0.0022 19.2 0.8 1 23 366 388 366 388 0.98
8 13 1.8e-06 0.00016 22.8 1.1 1 23 394 416 394 416 0.99
9 13 0.00029 0.026 15.8 1.2 1 23 422 444 422 444 0.98
10 13 0.0029 0.26 12.7 0.7 1 23 450 472 450 472 0.96
11 13 2.2e-05 0.002 19.3 0.5 1 23 478 500 478 500 0.98
12 13 6.2e-05 0.0054 17.9 2.8 1 23 506 528 506 528 0.98
13 13 0.00012 0.011 17.0 3.1 1 23 599 621 599 621 0.99

Sequence Information

Coding Sequence
ATGGCTGCTCTGAATAAACCTTTGCAGTTTGACAAAATATGTCGCGCTTGTTTAGAGATAAAAAAGGACATGCGACCTCTATTTGAACAACTTACAGCGACGATGTTGATGGGCATATCGAAAGTGCAGGTGGCAGTAGGAGACGGCCTGCCCCCCCAGCTGTGCCTCCAGTGCGTGCATCAGATCTCCCGGTGCCACGCCTTCAAGGACCTCGTCGAGAGGAATGACGTCACGCTGCGGGAACACGCCGCGCGTATGGCTGAAGAGGCCTTTAAGAGGGAGAGGGAAGAGAAGGACAAGTTACTGAGCCTTAATTGCGCGGAGCCATCATACATGCAATATATGGAGGTACCGCTGACCAACCCGGCTCAGATCCTGGACGGGTTCTTCACGGCCACGCCGGACCCGCTGACCGCCGAAACCACGGAATCCAAACAAGAATATGAAGTTGAAAAGCTGCAGCCAGACATCGCTCAGCAGAAAGACAAAGAAGGTCTGAACTCTGACGAGGAGAACTACTTACAACTGGTTCTGTTCCAAGCGACGTCCACAGTGTCGCCCGGTCGTCACGTTTGCAACCTCTGCCACAAGGAGTTCAAACACTCGCGCTGGCTCAAACAGCACATGCGCTCGCACACCAACTGGATCAAAGCTAATTGCAAGAAACCGCCCATGTGCTCTATCTGTGATAGAACCTTCAAGGGTCAGGGTATGCTAAAAATGCACATGCGTACCCACGAGGCGCGGCCAGCCAAGCAGCCTACATGCTCCGTCTGCCAGCGCACGTTCCCCACCAAGACGCTGCTGTACCGGCACCGGCAGACGCACTTCGAGCAGAAGACGCACCTGTGTACTGTGTGCGACAAGCGCTTCTACAGCGCGTATGCTCTCCGCTCGCACATGGCGAGACATCGCGGCGAGCGGCCCTACGTCTGCTCCACTTGCACCAAGAGCTTCTACAACCCCACAGACCTTAAGGTTCATTTTCGCCTGCACACTGGAGAGAAGCCGCTGAAATGCACGGAATGCAACAAGACGTTCCGTCGTCACTCGACGCTGTGCCAGCACATGAAGAAGCACCGCGGCATTCGGAACCACGTGTGCACTGTGTGTAACAAGGGCTTCTATGAAGTGTCCAAGCTTAATGCGCATATGCGAGTGCATACcggtgaGCGTCCATACGAGTGCCAGTACTGCGAGCGCCGCTTCGCGCAGCAGTCGGCGCTGATCTACCACCGCCGCACGCACACCGGCGAGAAGCCCTACAGCTGCAAGATCTGCTTCGCGCGCTtcaccacctcctccgccaGGAACAACCATATGGTCACCCATACTGGGAACAAGAGGTTCGCGTGCCCGGTGTGCCTGAAGGGCTGCACGTCGCGCACGGAGCTGCGCGTGCACGCCAGCAAGCACACCGGCGAGAAGCTGTTCGAGTGCGGCGTCTGCCAGCAGCGCTTCAGCTCCGCCTCCTACCTCGCCGTGCACCGCCGCTACCACTCCGGCGAGAAGAAGTACCACTGCCAGGTCTGCGGGAAGGGTTACGTAGAATCAAACTCTTACAAGAAACACATGAAGACTCACGGCGTCAGCAAGTCGGAGACAGAGTCGTCGGCGTCGGAGGCGAGCGCCGACAAGACCGACGCCACCGTCACCGAGCACACCACCACCAGCACCGACGATATGGACGTGCAGAACCAAGctCAAGGTCAAATCCAAATTCAAGTTCAAGAGCAGCAAGTTCTTCAAGTTCAAGGTCAAGTGGAGCGTCCTCCGCAGCAGAAGGTCACGCGCTACAAATGCGGTTTCTGCGTGAAGACGTATATGAATCTGCACAACTTGAAGAAACATATGCTGGTGCACACACAAGCCAATCAGGATAACACCCGAAACTCGGAGCCAATAATATTCCTGACACAACAGCAAAcacagcaacaacaacaacagcaacaacaacaacaacaagtGCAACAGCAACAAGTGCAACAACAACAAGTGCAACAACAACAGGTGCAACACCAACAGTTGCAGCAACAACACCAACAAGTGCAACAAGTCCAACAAGTACAAGTGCAACAGCAGCAAGTGCAGCAACAAGTGCAACAGCAGGTGCAGCACCACCAGCAACAGCAGTTGCAACAACAAGCTGTGTTGCAGGTCGGCAACGTGCAACAGCTCGCGGTGCCGATACACGCGCAACATGTTCAACAAGGCATCACTGTGTCTGGAGTTCAGAGCCAGCACCCGTACCCGGTGATCTCTTCAGTGCAGTCGCTGCAGCTGCAGCAAACACAACAGGTTAACACGCAACAGCCGCAGCAGCTTCAAGTACAAACCATACAGATACACCCGCAGCATCAACCTATACAAATTCATgcTGTGGGGGTGCAACAAGTGCAGCAGCAACAGTTGCACGTGGCCACCTCCTCGTGCCAGACCATGCTGCCCAATATATTGCAGCTGCAGCCGGGCACGGTGGCGGTGTCGGGGCTGGGGCAGCAGGAGCTGGGCGGCGTGACGCACCGCATCATCCTGCAGCCGCAGCCTGCACCTCCACACCCTGCAGTCTACACCATACACCACTGA
Protein Sequence
MAALNKPLQFDKICRACLEIKKDMRPLFEQLTATMLMGISKVQVAVGDGLPPQLCLQCVHQISRCHAFKDLVERNDVTLREHAARMAEEAFKREREEKDKLLSLNCAEPSYMQYMEVPLTNPAQILDGFFTATPDPLTAETTESKQEYEVEKLQPDIAQQKDKEGLNSDEENYLQLVLFQATSTVSPGRHVCNLCHKEFKHSRWLKQHMRSHTNWIKANCKKPPMCSICDRTFKGQGMLKMHMRTHEARPAKQPTCSVCQRTFPTKTLLYRHRQTHFEQKTHLCTVCDKRFYSAYALRSHMARHRGERPYVCSTCTKSFYNPTDLKVHFRLHTGEKPLKCTECNKTFRRHSTLCQHMKKHRGIRNHVCTVCNKGFYEVSKLNAHMRVHTGERPYECQYCERRFAQQSALIYHRRTHTGEKPYSCKICFARFTTSSARNNHMVTHTGNKRFACPVCLKGCTSRTELRVHASKHTGEKLFECGVCQQRFSSASYLAVHRRYHSGEKKYHCQVCGKGYVESNSYKKHMKTHGVSKSETESSASEASADKTDATVTEHTTTSTDDMDVQNQAQGQIQIQVQEQQVLQVQGQVERPPQQKVTRYKCGFCVKTYMNLHNLKKHMLVHTQANQDNTRNSEPIIFLTQQQTQQQQQQQQQQQQVQQQQVQQQQVQQQQVQHQQLQQQHQQVQQVQQVQVQQQQVQQQVQQQVQHHQQQQLQQQAVLQVGNVQQLAVPIHAQHVQQGITVSGVQSQHPYPVISSVQSLQLQQTQQVNTQQPQQLQVQTIQIHPQHQPIQIHAVGVQQVQQQQLHVATSSCQTMLPNILQLQPGTVAVSGLGQQELGGVTHRIILQPQPAPPHPAVYTIHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01094252;
90% Identity
iTF_00784582; iTF_00786178; iTF_01285752;
80% Identity
-