Hass004842.1
Basic Information
- Insect
- Helicoverpa assulta
- Gene Symbol
- -
- Assembly
- GCA_029618815.1
- Location
- CAWLCW010000004.1:5205035-5207368[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.011 14 6.6 2.6 18 43 9 31 6 32 0.94 2 21 0.048 60 4.6 0.1 16 44 35 60 32 60 0.84 3 21 0.003 3.8 8.4 0.0 18 43 68 90 63 91 0.90 4 21 2.8e-05 0.036 14.9 1.8 16 44 97 122 95 122 0.91 5 21 0.0016 2 9.4 1.0 18 44 129 152 127 152 0.94 6 21 6.7e-05 0.085 13.7 1.1 14 43 156 182 153 183 0.88 7 21 0.0029 3.6 8.5 0.3 17 44 188 212 184 212 0.89 8 21 0.0021 2.7 8.9 0.2 17 44 219 243 214 243 0.86 9 21 3.8 4.7e+03 -1.5 0.0 35 44 268 277 249 277 0.81 10 21 1.2 1.5e+03 0.1 2.1 13 43 297 324 283 325 0.77 11 21 2.8 3.6e+03 -1.1 0.4 18 34 332 353 328 355 0.73 12 21 0.33 4.2e+02 1.9 1.3 15 27 358 370 350 384 0.82 13 21 0.039 48 4.9 3.4 15 43 403 428 396 429 0.86 14 21 1.2 1.5e+03 0.1 8.6 9 29 426 446 420 458 0.69 15 21 0.0036 4.5 8.2 3.2 13 43 459 486 451 487 0.78 16 21 0.068 85 4.1 0.8 17 44 492 516 488 516 0.85 17 21 0.27 3.4e+02 2.2 0.8 15 28 520 533 517 545 0.81 18 21 5.3 6.7e+03 -1.9 0.4 35 43 567 575 554 576 0.80 19 21 0.00017 0.21 12.5 2.6 6 43 605 641 603 642 0.81 20 21 0.88 1.1e+03 0.6 0.1 14 40 658 686 651 688 0.80 21 21 5.3 6.6e+03 -1.9 0.2 12 23 686 697 674 702 0.70
Sequence Information
- Coding Sequence
- ATGTTCACAAACACCCTAGATTTCGTCTGCGATTACTGTTCCCGAACTTTCACTAGAAAATACAACTTACAAACACATATAGAAAATTGTCATATCAATTCATCTTGTCAATGTGAGATCTGTGGTCAGAATTTTGGCAGCCCAGCTGGTTTACTCCAACATTTGGGCAGAGGACATAATTCTTACAGTCAACCATTCCCAGAATGCGACCTCTGTGGTCGTATCTTCACTAGAAAACAGAATATTGTCTCTCATATGATAACGGTACATTTACAAGGGTTGGGCTACGCGATTAAGTGTAGATTATGTGAAAAAACTTTCACAACGGAACGCAATTTGAAACGACATATGAATCAGTTGCACAATCCTGATATTGAGTATCCTACGTGTAATGATTGCCATAAGGTTTTCAGAGGAAAACACTCTTTGATCGCTCATATACAATCCGTTCACAGCGCAACAGAGAAAGATGTAATAAAATGCCATTTATGTGAAAAAGTGTATACGAATAACAGAAACTTGAAACGGCATGTTGAAATGTTTCACGGTGAAAAGGGAgaatttaaatgtgatatttgcCCTAAAGTTTACACGTCTAACCAGAGTTTGAGACGCCACGCTCGAACGAGACACAGTACGGACAACCAGGAACAGTTGACTTGTAACTTCTGTATGAAAGTGATAATCGGTAGAGAGAATTTCGAAAGTCATATACAATTCCATCACCAAGAATTGGAAGTTGAGATAAAGAAGGAATTCGCTTGCGAAACTTGCGGGGAGAGCTTTTTAGAGGAACCTTATTTGAGACAGCATGTAAAAACCGAACACTCGTTCAAAACCTTCTACAAATactgtaaaaagtctttattaaaACAGTATAAGGTTGATAATCATACAATTTACAACTGCGAATTCTGTCACAGTTCATTTTTGACAGTCTACGAGCTTAAAGACCATATGCGTCTAAACCATGATACGGAATACTCTCTTTCGACCTGTAATGTGtgttttaacaagttttttAGCAAAGAATCTATGTCTGCTCACAAGACTGTCTGCTTACCCCCTGCAAACGTTAACAAATGCAGTCATTGTGACAAATTGTTCACGGATATATCGAGTTTGGAATTCCATACGCGAATTTTTCATCCTCAAGCTCAAATCGCAGATTCTAATATAACTTCGACTAATATGGAAGACGATTCAGTGTCTTTTAAGTGCGAACATTGTGATCGAATCTACTACAGTGATAGATCTTTAAAACATCATATCAAACTTAAACATACGACTGATGAGGAGGTAGAGTGTCAACTGTGCGGAAAAATTTGcagtaataagtattatttagcGTCTCATATTAAAATCGTCCATAATAACGATTCGTGGTCCCGATGTGAGTACTGCGACAAACAGTTCAAATCTAAGAGAAATATTCGCCGTCATATAGAGTACACGCATTTGGGCATGCAAAGATACAAGTGTATAGAATGCGAAACGTTATTCAAAGAGAAAAGAAGTCTCAGAAAACATGTTAGAACGAAACATCCTAACTCCGCAACGTTTCCCCAATGTCATATTTGTCATAAGCGGTTTGAATCTGCGAAATCTTGTAAGATTCATCTCAAGTTACTACACTCTTTCAATATGAATACGTACCCATGTCATCTATGTTCAGTTTCCTTCGGGTCTAACGAGGCTTTGTCAATACATCTCGAAACCAAACACTTAGCCGAAGATGAGATTTACAAGTGCGAGGAATGTAACTTAGTATTTAAAGGACACGAAAAATTTGAGGCCCACAACGAAATATGCCACGTGAACTTAGTTCCTAATATTAAACAGAAAATCCTACCTCGCTGTATTCTCTGCATGAAGGATTTTAGTACTAGAAAAACTTTGAAACGGCATATAAAGaaatttcatgaaaattttGATGTGGACGAATTAGCTACTTTTGGGTCTAGACGGCGCACTTTTACAGTAGAATGTGAAAACTGTATTAAGAACTTTAatgatgatttttatttcaatatctataacaaattaaaacatttgcGCGATTCTGTAATTTTCAAATGCGAGTTCTGCTACGTTTCGTACAATTCTTTAGAATTTGCGATTCAGAGGTATAAGGTATCTAATACGGATGGTTGCAAAACTAAAATGATTTTAAGTGAGTTATGTACGGCAGAAATgagtgaagaagaaaatgatTTTTCTCATTTCGGGGCGTTACATGATATGTTGCCTGAGAGTACGACTGCGGATATTAAGTTGGAGCCGCTTGAGGAGTCGAATGAGATCCAAATTAAGTTGGAACCGGCTTCGCCTTGA
- Protein Sequence
- MFTNTLDFVCDYCSRTFTRKYNLQTHIENCHINSSCQCEICGQNFGSPAGLLQHLGRGHNSYSQPFPECDLCGRIFTRKQNIVSHMITVHLQGLGYAIKCRLCEKTFTTERNLKRHMNQLHNPDIEYPTCNDCHKVFRGKHSLIAHIQSVHSATEKDVIKCHLCEKVYTNNRNLKRHVEMFHGEKGEFKCDICPKVYTSNQSLRRHARTRHSTDNQEQLTCNFCMKVIIGRENFESHIQFHHQELEVEIKKEFACETCGESFLEEPYLRQHVKTEHSFKTFYKYCKKSLLKQYKVDNHTIYNCEFCHSSFLTVYELKDHMRLNHDTEYSLSTCNVCFNKFFSKESMSAHKTVCLPPANVNKCSHCDKLFTDISSLEFHTRIFHPQAQIADSNITSTNMEDDSVSFKCEHCDRIYYSDRSLKHHIKLKHTTDEEVECQLCGKICSNKYYLASHIKIVHNNDSWSRCEYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSATFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCHLCSVSFGSNEALSIHLETKHLAEDEIYKCEECNLVFKGHEKFEAHNEICHVNLVPNIKQKILPRCILCMKDFSTRKTLKRHIKKFHENFDVDELATFGSRRRTFTVECENCIKNFNDDFYFNIYNKLKHLRDSVIFKCEFCYVSYNSLEFAIQRYKVSNTDGCKTKMILSELCTAEMSEEENDFSHFGALHDMLPESTTADIKLEPLEESNEIQIKLEPASP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00447464;
- 90% Identity
- iTF_00786167;
- 80% Identity
- iTF_00783735;