Hass011717.2
Basic Information
- Insect
- Helicoverpa assulta
- Gene Symbol
- -
- Assembly
- GCA_029618815.1
- Location
- CAWLCW010000012.1:9290088-9291980[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-07 4.4e-05 23.9 0.0 3 42 16 56 14 58 0.93
Sequence Information
- Coding Sequence
- ATGCCTCGgaaatatataagaaaaaaagaACAAACATACACCATCGAATCATTACAAAAAGCTGTGCAAGAAATAAAAGACCAGAAGATAACTTTTCGTCAGGCGGAAGAAAAGTATGGGATTCCCAGAGCTACTTTGTTTGACCAAGTGAAAAAAGGCAGTGTTTCTACAATACCGAAGAGAGGtaaaaaatcagtttttaaCGAAACACAAGAAAATGAActggttgattttattttaaggtcATGTAAGGCTTTCTTTGGTATAACAATACCTACTCTGAGAAAGATAGCTTTTGATTTTGCCACCGCGaataacataaaacataatttcaatAAAGAAAATGGCATGGCAGGAATGGACTGGTATTACAATTTTTTGGCTAGACATCCAAATATATCACTTCGAAGGCCTGAAGCTACTTCCATAAATAGAATTACCGCATTTAATGAAGAAGAAAccgatatattttttgtgaatctGAAAGCTCTCatgattaaatataaatttaaatctGATTCAATTTACAATATAGATGAAACTGGGATTAGTACGGTACAACGCAATTCCAGGATTCTTGCACCAAAGGGACTAAAACAGGTTGGAAAATGTACCAGTGCAGAACGTGGTTCTTTAACTACAGTTGTGAATTGCTTTAGTGCTGGAGGCTCCTACGTTCCACcattttttatctttaaaagAAAAAGGATGAATGCTCAGCTTATGAAAGATAGTAATAGCAACATGGTAGCTTGTGTTTCAGACTCTGGTTGGATCAATGAATCGATATTTGTTGATTGGCTCCAGCATTTTAAAGGATTTGCTAAACCATCATCTGACAATCCCGTTTTGTTAGTTTTAGACAACCACGAGAGCCATATTAGCCTGAAAGGTTACGAGTTTTGTCGTAAAAACTTTATCCATGTTTTGACATTGCCTCCACATACATCGCATAGAATGCAGCCTTTAGACTTGACCTTTCACGGACCACTAAAAACAGCATACAACAGAGAATGTGAAACCTATATGGTTAACCATCCTGGAGCAAAAATTACAGCATTTGATATTGTTGGTCTTTATACAAAAGCTTTTAACCGATGCTCGTCTGTTGATAAAGCTATAAATGGCTTCAAGAGTGCTGGAATTTTTCCAGTTGATCAAGATAAATTCAAGGGAACTTTCGACAGTTTCGGTGATATAATTACACCAGAAACTCCACGTGATACCAGCCATGTGGGTCCTGATTATAACAGCCAAAGAGAGTTTCATAGCGAATCTCAAGTGAGTGATGCAGCTAATAACAGCATTCCTAGTGAAGTAAGATCTCAACAAGAGTCTCAACCCTCTGGTAACATAAACATTATCGATGAATCCGTTCCTTGCGTAGCTGATGAAGacaaaataaatgacaataatgcTATAAGTGAAGCTGATTTAAACCAAAGTACGACAAGTCACACAAGTCAATCTTCATCAGTACCGCTTAGTGATTTAATAAAGGTCCCAACTCTACAAATTCATCGTAGCAAACGGACAGTAAACAAAAAGCATTCCATCATTTTCACCAGCACACCGGAAAAAAATAATCTAGAAGAAAAAGAACAAAAGAAATTAGACAAGAAAAGAAAATctcaagaaaaagaaaataaaactgcaTCAAAAAAGCTAAAAAAGTCAAAACTTTCTACAGGAAAAGGCTCAAAGGGTGTAAGAAATctgaataattttgaaaatgaaggaaatgttgattacttttgcatttattgtcAGGAAAAGTACAGTGATCCACCCGCCGAAGACTGGATTATGTGCTCAAAGTGTAACATGTGGGCCCATGAGAACTGCACTGCAGGAAGTTCTTCTAAAGGCTTTACTTGTGATTTTTGTCAATGA
- Protein Sequence
- MPRKYIRKKEQTYTIESLQKAVQEIKDQKITFRQAEEKYGIPRATLFDQVKKGSVSTIPKRGKKSVFNETQENELVDFILRSCKAFFGITIPTLRKIAFDFATANNIKHNFNKENGMAGMDWYYNFLARHPNISLRRPEATSINRITAFNEEETDIFFVNLKALMIKYKFKSDSIYNIDETGISTVQRNSRILAPKGLKQVGKCTSAERGSLTTVVNCFSAGGSYVPPFFIFKRKRMNAQLMKDSNSNMVACVSDSGWINESIFVDWLQHFKGFAKPSSDNPVLLVLDNHESHISLKGYEFCRKNFIHVLTLPPHTSHRMQPLDLTFHGPLKTAYNRECETYMVNHPGAKITAFDIVGLYTKAFNRCSSVDKAINGFKSAGIFPVDQDKFKGTFDSFGDIITPETPRDTSHVGPDYNSQREFHSESQVSDAANNSIPSEVRSQQESQPSGNINIIDESVPCVADEDKINDNNAISEADLNQSTTSHTSQSSSVPLSDLIKVPTLQIHRSKRTVNKKHSIIFTSTPEKNNLEEKEQKKLDKKRKSQEKENKTASKKLKKSKLSTGKGSKGVRNLNNFENEGNVDYFCIYCQEKYSDPPAEDWIMCSKCNMWAHENCTAGSSSKGFTCDFCQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00198065;
- 90% Identity
- iTF_00198065;
- 80% Identity
- -