Bsom009700.1
Basic Information
- Insect
- Bedellia somnulentella
- Gene Symbol
- -
- Assembly
- GCA_963576735.1
- Location
- OY755173.1:17964800-17966452[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4e-08 5.6e-05 24.1 0.0 3 42 16 56 14 58 0.94
Sequence Information
- Coding Sequence
- ATGCCTCggaaatatataagaaaaacagAACAATCATACACCATCGAATCATTACAAAAAGCTGTGCAAGAAATAAAAGATCAGAAGATAACTTTTCGTCAGGCGgaagaaaaatatggtattcCCAGAGCTACTTTGTTTGATCAAGTGAAAAAAGGCAGTATTTCTACAATACCAAAGAGAGGAAAAAAATCTGTTTTTAACGAAATGCAAGAAAACGAACtggttgattttattttaaagtcatGCAAGGCTTTCTTTGGGATAACAATACCTACTCTGAGAAAGATAGCTTTCGATTTTGCCACCGCAAACAACTTAAAACATAATTTCAATAAAGAAACTGGTATGGCAGGAATGGATTGGTATTACAATTTTTTGGCTAGACATCCAAATATATCACTTCGAAGGCCTGAAGCTACTTCCATAAATAGAATTACCGCATTTAATGAAGAAGAAgtcgatatattttttgtgaatCTGAAAGCCCTcatgattaaatacaaatttaaatctGATTCAATTTACAATATAGATGAAACTGGGTCTAGTAATGTACATCGCAATTCCAGAATTCTTGCACCAAAGGGAGTAAAACAGGTTGGAAAATGTACCAGTGCAGAACGTGGTTCTTTGACTACAGTTGTGAATTGCTTTAATGCTGGAGGCTCGTACATTCCAccattttttatctttaaaagAAAAAGGATGAATGCTCAGCTTATGAAAGATAGTAATAGCAACATGGTAGCTTGTGTTTCAGACTCTGGTTGGATCAATGAATCGATATTTTTTGATTGGCTCCAGCATTTTAAAGCATTCGCTAAACTATCGGCTGACAATCCCATTTTGTTAGTTCTAGACAACCACGAGAGCCATATTAGTCTGAAAGCTTACGAGTTTTGtcgtaaatattttatccaTGTTTTGACATTGCCTCCGCATACATCGCATAGAATGCAGCCATTAGACTTGACCTTTCATGGACCACTAAAAACAGCATACAACAAAGAATGTGAAACCTATATGGTTAACCATCCTGGAGCAAAAATTACAGCATTTGATATTGTTGGTCTTTATACAAAAGCTTTTAACCGATGCTCGTCTATTGATAAAGCTATAAATGGCTTCAAGAGTGCTGGAATTTTCCCGGTTGATCAAGATAAATTCAAGGGCACTTTCCAAAGTTTCGGTGATATTATTATACCAGAAACTCCATTGGATTCCAGCCATGTGGGTCCTGATCATAACAGCCATAGAGAGATTCATAGCGAATCTCAAATTAGTGATGCAGCTAATAACAGCATTCCTAGTGAAGTAACATCTCAACAAGAGTCTCAGCCCTCTAGTAACATAAACATTATCGATGAATCCATTCCCTATATACCTGATCAAGACGAAATAAATGAGAATAATGCTATAAGTGAAGCTGATATAAACCAAAGTACGACAAGTCAAACAAGTCAATCTTCATCAGTACCGCTTAGTGATTTAATAAAGGTCCCAACTCTACAAATTCATCGTAGCAAACGGTCAGTAAACAAAAAgcattccatcatttttaccaGCACGACGGAAAAAAAGAATCTAGAAGAAAAGGAACAAAAGAAATTAgacaagaaaaagaaaataaaactacATCTAATAAGCTAG
- Protein Sequence
- MPRKYIRKTEQSYTIESLQKAVQEIKDQKITFRQAEEKYGIPRATLFDQVKKGSISTIPKRGKKSVFNEMQENELVDFILKSCKAFFGITIPTLRKIAFDFATANNLKHNFNKETGMAGMDWYYNFLARHPNISLRRPEATSINRITAFNEEEVDIFFVNLKALMIKYKFKSDSIYNIDETGSSNVHRNSRILAPKGVKQVGKCTSAERGSLTTVVNCFNAGGSYIPPFFIFKRKRMNAQLMKDSNSNMVACVSDSGWINESIFFDWLQHFKAFAKLSADNPILLVLDNHESHISLKAYEFCRKYFIHVLTLPPHTSHRMQPLDLTFHGPLKTAYNKECETYMVNHPGAKITAFDIVGLYTKAFNRCSSIDKAINGFKSAGIFPVDQDKFKGTFQSFGDIIIPETPLDSSHVGPDHNSHREIHSESQISDAANNSIPSEVTSQQESQPSSNINIIDESIPYIPDQDEINENNAISEADINQSTTSQTSQSSSVPLSDLIKVPTLQIHRSKRSVNKKHSIIFTSTTEKKNLEEKEQKKLDKKKKIKLHLIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00932451; iTF_00783410; iTF_01333745;
- 90% Identity
- iTF_00932451; iTF_00783410;
- 80% Identity
- -