Hass018421.1
Basic Information
- Insect
- Helicoverpa assulta
- Gene Symbol
- clz9
- Assembly
- GCA_029618815.1
- Location
- CAWLCW010000019.1:12320267-12322042[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.5e-08 2.9e-05 24.5 0.1 17 43 29 55 19 57 0.87
Sequence Information
- Coding Sequence
- ATGGTttcaaataacaaaagaaaaaccaatAGAGGTGATTGGACACAAAAAAATTTAGAACGGGCTATGGAAGAAGCTAGTCGAACTTCGGTTCGCGCTGCAGCAAAGAAATACAACATTCCGTTTAGTACCTTATTAAGACATTGTAAAACAAGATCTACCAGCAAACATTTAGGTAGGTTCAAACCAATTTTTACTGCAGACGAAGAAAATACTTTAAAGAAATATCTCACAACAATGGACGATTTATTTTATGGTCTAACACCTACTGATTTTAAAAAACTTGTTGGAGAATTCGCTCAGAAGCTAGGTAAAGGGGACAGGTTTCCAAAAGGTTGTGCAGGTAAAGACTGGTTATCCGGTTTTCGAAAAAGGCACACGTCAATTGTGCTAAGAACCCCTGAACCTACATCATTGGCTAGAGCCCGTGGATTTAACCGTCCCCAGGTAGAAAGATTCTATGATCTTTTAGAAGAATTGATCGACAAACACTCCTTGGATCCTACACAAATTTATAATATGGACGAGACAGGTATTCGTTCATCTACTACCAAGCCCCCAAAAATTCTTTCTACTTATGGCAAGCGACAGGTTGGCCTAATCTCCAGCGTAGAACGAGGAGTTTTAACGACAGTAGTGTGCTGCTGTAATGCAGCAGGATCGTTCCTAccgccattttttatttttaagcggAAAAGATTTGTCCCTCGTCTGCTTGATGGAGCTCCACCTGGATCACAAGGCACTGTATCGGATTCAGGCTGGATTTCTGGGccaatatttttgaattggtTGGAATTTCTAGTTGAGAAGACGCGACCAACAGAACAAAAGAAATTACTTCTTTTGTTAGACAACCACGAGTCACATAAATACTATCCTGCTCTTGAGTACGCTACTAAGCACCATATAATATTTCTGTCGTTTCCACCACATACTACAAATAAGCTACAACCTTTAGATGTTGCTGTATATGGACCGATCAAAAAGTATTTCGAGCAAGAAATCGCAACATTTCACAAAGCACATCCAGGTAGAACCATCGCACAACTAGATGTGGCATCAATATTTAATCCTGCCTATTTGAAAGGTGCCACTCCCGTAAATTCTATTAGTGGATTTCGTACTACAGGAATATGTCCATATAACAGAAATTTATTCCAAGAGTGTGATTTTGCCCCTGCCTCAGTTACCGACCAACCGCAAATGGATGACACCAATGGACTTCAAATTAACAGGGATCCACTCACGGCCATGTCATCTACTAGCCTAGAAGTACCGACTCATAAGACACCTCCACTATCACCGTCAATGTCTGTGGCATCCACTGTCGCCATGCCTGATTCACAAACATCTGCTGAGGTTGTTCTCAAATCTATACGTCcaatcccaaccgctgtaggtCAGAAAATGACTACAAGAAAAAGGAAAACTCAAAAAGCCGAGATTTTGACATCGACGCCTGTGAAGGTGGACCAAAACCAAAGATTCCAAAAGGCTGAACAGCGTGCTGTTAAAAATTTGGGCAAGGAGAATCTATTATCATCCACAAATTATCAAACACCTTCCACATCAAGaatgaaacaaaacaaatcGGTGCGGGGTGCTGCCAAAACTGTGCGTGATTATTATTGCACAGTATGCAAGGAACAATTTGTACATCCTCCAGCTGAAGACTGGATACAATGCTCCCAGTGTAAGGACTGGACTCACGAAGCCTGTTCAGCTTATCTTGGAAGAGGAACATACTTCTGTGATGACTGTCAAGATATTTGA
- Protein Sequence
- MVSNNKRKTNRGDWTQKNLERAMEEASRTSVRAAAKKYNIPFSTLLRHCKTRSTSKHLGRFKPIFTADEENTLKKYLTTMDDLFYGLTPTDFKKLVGEFAQKLGKGDRFPKGCAGKDWLSGFRKRHTSIVLRTPEPTSLARARGFNRPQVERFYDLLEELIDKHSLDPTQIYNMDETGIRSSTTKPPKILSTYGKRQVGLISSVERGVLTTVVCCCNAAGSFLPPFFIFKRKRFVPRLLDGAPPGSQGTVSDSGWISGPIFLNWLEFLVEKTRPTEQKKLLLLLDNHESHKYYPALEYATKHHIIFLSFPPHTTNKLQPLDVAVYGPIKKYFEQEIATFHKAHPGRTIAQLDVASIFNPAYLKGATPVNSISGFRTTGICPYNRNLFQECDFAPASVTDQPQMDDTNGLQINRDPLTAMSSTSLEVPTHKTPPLSPSMSVASTVAMPDSQTSAEVVLKSIRPIPTAVGQKMTTRKRKTQKAEILTSTPVKVDQNQRFQKAEQRAVKNLGKENLLSSTNYQTPSTSRMKQNKSVRGAAKTVRDYYCTVCKEQFVHPPAEDWIQCSQCKDWTHEACSAYLGRGTYFCDDCQDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00123321;
- 90% Identity
- iTF_00667381;
- 80% Identity
- -