Aepo009817.1
Basic Information
- Insect
- Apamea epomidion
- Gene Symbol
- -
- Assembly
- GCA_947507525.1
- Location
- OX382248.1:14447853-14449628[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-07 0.00013 22.0 0.2 17 43 29 55 19 57 0.87
Sequence Information
- Coding Sequence
- ATGGTTTCAAATTACAAAAGAAAAACCAATAGAGGTGATTGGACACAAAAAAATTTAGAACGGGCTATGGAAGAAGCTAGTCGAACTTCGGTTCGCGCTGCAGCAAAGAAATACAACATTCCGTTGAGTACCTTATTAAGACATTGTAAAACAAGATCTACCAGCAAACATTTAGGTAGGTTCAAACCAATTTTTACTGCAGACGAAGAAAATACTTTAAAAAAATATCTCACAAGAATGGACGATTTATTTTATGGTCTAACACCTACTGATTTTAAAAAACTTGTTGGAGAATTCGCTCAGAAGCTAGGTAAAGGGGACAGGTTTCCAAAAGGTTGTGCAGGTAAAGACTGGTTATCCGGGTTTCGAAAAAGGCACACGTCAATTGTGCTAAGAACCcctgaacctacatcattggctagagcccgtggatttaaccgtccccaggtagaaagattctatgatcttttagaagaattgatcgacaaacactccttggatcctacacaaatttataatatggacgagacaggtattcgctcatctactaccaaacctccaaagattctttctacttatggcaagcgacaggttggcctaatctccagcgtagaacgaggagttttaacgacagtagtgtgctgctgtaatgcagcagggtcgttcctaccgcctttttttatttttaagcggaaaagatttgtccctcgtctgcttgatggagctccacctggatcacaaggcactgtatcggattcaggctggatttctgggccaatatttttgacttggttggaattgctagttgagaagacgcgaccaacagaacaaaagaaattacttcttttgttagacaaccacgagtcacataaatactatcctgctcttgagtacgctactaagcaccatataatatttctatcgtttccaccacatactacaaataagcaacaacctttagatgttgctgtatatggaccgatcaaaaagtatttcgagcaagaaatcgcaacgtttcacaaagcacatccaggtagaaccatcgcacaactagatgtggcatccatatttaatcctgcctatttgaaaggtgccactcccgtaaattctattagtggatttcgtactacaggaatatgtccatataacagaaatttattCCAAGAGTGTGATTTTGCCCCTGCCTCAGTTACCGACCAACCGCAAATAGACGACACCAATGGACTTCAAATTAACAGGGTTCCACTCACGGCCATGTCATCTACTAGCCTAGAAGTACCGAGTCATAAGACACCTCCACCATCACCATCAATGTCGGTGGCATCCACTGTCGCCATGCCTGATTCACAAACATCTGCTGAGGTTGTTCTCAAATCTTATACGTCCAATCCCAACCGCTTATGCAAGGAACAATTTGTACATCCTCCAGCTGAAGACTGGATACAATGCTCCCAGTGTAAGGACTGGACTCACGAAGCCTGTTCAGCTTATCTTGGAAGAGGAACATACTTTTGTGATGACTGTGAAGATAATTGA
- Protein Sequence
- MVSNYKRKTNRGDWTQKNLERAMEEASRTSVRAAAKKYNIPLSTLLRHCKTRSTSKHLGRFKPIFTADEENTLKKYLTRMDDLFYGLTPTDFKKLVGEFAQKLGKGDRFPKGCAGKDWLSGFRKRHTSIVLRTPEPTSLARARGFNRPQVERFYDLLEELIDKHSLDPTQIYNMDETGIRSSTTKPPKILSTYGKRQVGLISSVERGVLTTVVCCCNAAGSFLPPFFIFKRKRFVPRLLDGAPPGSQGTVSDSGWISGPIFLTWLELLVEKTRPTEQKKLLLLLDNHESHKYYPALEYATKHHIIFLSFPPHTTNKQQPLDVAVYGPIKKYFEQEIATFHKAHPGRTIAQLDVASIFNPAYLKGATPVNSISGFRTTGICPYNRNLFQECDFAPASVTDQPQIDDTNGLQINRVPLTAMSSTSLEVPSHKTPPPSPSMSVASTVAMPDSQTSAEVVLKSYTSNPNRLCKEQFVHPPAEDWIQCSQCKDWTHEACSAYLGRGTYFCDDCEDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00783408;
- 90% Identity
- -
- 80% Identity
- -