Hass006709.1
Basic Information
- Insect
- Helicoverpa assulta
- Gene Symbol
- -
- Assembly
- GCA_029618815.1
- Location
- CAWLCW010000007.1:2798378-2798869[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.4e-11 2.1e-08 34.6 0.0 4 37 14 48 11 53 0.90
Sequence Information
- Coding Sequence
- atggaagaGAAGAAAAAGAAAGGATCCTGGGAGCCACAGAGCTTACGAACTGCTATTGATAAGGTTATGTCAAAAAAACTGAGTGCAAGACAAGCTGCAATGCGATACAATATTCCTAAAAGCACTATTCATGATAAGATAAAGGCCCTAAATCGAGGAGAAGAAGTAACAATGACACCAAAGTTAGGTAGGTTCACTAACACCTTCTCAGCAGAGTATGAACAAGTCTTGGTGGACCACATTAAAGATTTATCGAATAGATGCATGCCGCTCATGAAAAAGGAGTTTCTAAAATTTGCATACGACTTAGCTGAAGCCATGAAGATTCCTCATCgatttaataaagaaaaaggCAGTGCtggtaaacatttttactaCGACTTCATGAAAAGGCATTCTGACATTTCGATGAGAGCACCGGAATCGACAAGCATGATGCGCGCCGTAGGATTTAACAAACCACAAGTGGATCTATTCTACGACAATCTTTAA
- Protein Sequence
- MEEKKKKGSWEPQSLRTAIDKVMSKKLSARQAAMRYNIPKSTIHDKIKALNRGEEVTMTPKLGRFTNTFSAEYEQVLVDHIKDLSNRCMPLMKKEFLKFAYDLAEAMKIPHRFNKEKGSAGKHFYYDFMKRHSDISMRAPESTSMMRAVGFNKPQVDLFYDNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01090629; iTF_01154982; iTF_00931164; iTF_00323421; iTF_00040722; iTF_01090630; iTF_01154983; iTF_01264359; iTF_01090632; iTF_01090631; iTF_00124174; iTF_01018511; iTF_00063510; iTF_00779442; iTF_01090643; iTF_01156224; iTF_00826836; iTF_00447062; iTF_01157595; iTF_00290607;
- 90% Identity
- iTF_01157595;
- 80% Identity
- -