Ajug002544.1
Basic Information
- Insect
- Amorpha juglandis
- Gene Symbol
- -
- Assembly
- GCA_949126905.1
- Location
- OX421367.1:4014451-4015167[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.6e-11 3.2e-08 33.5 0.0 3 37 13 48 11 53 0.89
Sequence Information
- Coding Sequence
- ATGgaagagaagaaaaaaaaaggatCGTGGGAGCCACAGAGCTTACAAACTGCCATTGATAAGGTTTTATCTAAAGAACTGAGTGTAAGACAAGCAGCAATGCGATACAATATTCCTAAAAGCACTGTACATGACAAAATAAAGGCGCTAAATCGAGGAGAAGAAGTAACTATGAAACCTAAGTTGGGTAGGTTCACTTGCACCTTCTCACAAGAGTATGAACAAGTCTTGGTCGACCACGTTAAACATTTATCTAACAGATGTATGCCGCTAATGAAAAATGAGTTTCTGAAGTTAGCCTACGATTTAGCTGAAGCAATGAAGATCCCTCATcgatttaataaagaaaaaggCAGTGCTGGTAAGCATTTTTACTATGAATTCATGAAAAGGCATTCTGACATTTCGCTGAGAGAACCGGAATTAACCAGCATGATGCGCGCCATTGGATTTAACAAACCGCAAGTGGATGTATTCTATGACAATGTTGAAAGACCAATGACACAGTACAAATTCACACCCTCAAGAATTTATAACTGTGATGAAACTGGCATCAGTTGCGTGCACAAACATCAAAAAGTTCTCGCTCCGAAAGCTAACCGTCAAATAGGAAAGCTCACTTCTGCTGAGAGGGGTATAAATATCATAGTTTTGTTCTATATGAGTGCTAACGGTCACTACATACCGCCATTTTTGTTTTTCCTAGGCAAAGAATAA
- Protein Sequence
- MEEKKKKGSWEPQSLQTAIDKVLSKELSVRQAAMRYNIPKSTVHDKIKALNRGEEVTMKPKLGRFTCTFSQEYEQVLVDHVKHLSNRCMPLMKNEFLKLAYDLAEAMKIPHRFNKEKGSAGKHFYYEFMKRHSDISLREPELTSMMRAIGFNKPQVDVFYDNVERPMTQYKFTPSRIYNCDETGISCVHKHQKVLAPKANRQIGKLTSAERGINIIVLFYMSANGHYIPPFLFFLGKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00783368;
- 90% Identity
- iTF_01018511;
- 80% Identity
- -