Hass021258.1
Basic Information
- Insect
- Helicoverpa assulta
- Gene Symbol
- -
- Assembly
- GCA_029618815.1
- Location
- CAWLCW010000024.1:2481147-2483411[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.4e-14 2.5e-11 43.9 0.0 2 41 11 50 10 52 0.93 2 2 1.9 7.4e+02 0.8 0.0 6 19 506 521 506 522 0.83
Sequence Information
- Coding Sequence
- ATGAGTGATAAGAAAAGGTTAAAGTATTCGCAGGAAAATATGAAGAAAGCACTACGAGATATACGAGAGAAGAAAATGAGTATAAATCAGGCTGCAAAATCATACGACATTCCAAAAACAACGATATTAGACAGATTAAAagacaaatataaaaatccAGGTAACATAGGCGGTCCAACTGTATTGACAAGCTCAGAAGAAATGTATCTGGTGAAATGGATTTTAGAATTGGGCGAAGTCGGTTTTCCGATAACGAAGACTCAGTTACTGGATTCTGTCACTAAATTAATTAAGAGTTTAGGCCGTCAAAATCCTTTTAAAGATGACCAGCCGGGTAAGAAATGGTATAATGGCTTTCTTGCTCGCCACCCGGAAGTTTCGAAAAGAGTTCCACAATCTCTTACAACATGCAGAGCGATTGTTTCGGAGAATAATATTAGGAgctggttttcaaaaatacggcaatattttgttgataataaattaatagaacTTCTCCAAGACCCCAAACGTATCTTCAATTGTGATGAGAGCGGTTTTTATCTGTCGCCTCAAGAAAAGCAAGTACTAGTCAGAAAAGGCTCGAAAAAAGTGTACAATCGTACTGTCAACGACGAGAAAGAGTGTTTGACGGTTTTACTTACAGTAGCTGCTGATGGGGCAATACCTCCACCATTGATTATGTTTCCGTATAAACGCTATGTTCCGTCGTACATCACAGCCAATATGCCTAAAGGGTGGGGAATGGGTCACTCTGATTCTGGGTGGATGACTAGTGAGACATTTTATGAATACATCACAAATGTCTTTCACCCATGGTTAAAAGAAAAAGGAATCCAAATGCCAGTAGTTCTTTTTCTGGATGGTCATTCATCTCACATTAATATTAATCTGAGTGAATACTGTAAAGAACATGAGATAATTCTGATAGCATTCTACCCCAATGCTACTCACCGTCTACAGCCATTGGATGTAGGGGTATTTTATCCTTTAAAAAATTGTTGGCGCAATGATGTCCGGGAATGGCGTATGGCAAACAGCGGGAAAAAAATGCAGCGATCAGATTTTCCGATAATATTGTATAAGTCTATAAATGCAACACTTTCGCCTGCGATAATTGCAAAAGCATTCCAAACGTGTGGGCTCTATCCGTTTAATGAGGATGCTATAGATTACTCGAAGCTAATAAAAGAAATTTCCAATGAAGAAAATAACAATCTAGCACTATCTACTGCTAATCAACACGTCACACACAAAACAGATGGCAGTCAACCATTGAATTTACTAAGTGAAGTGGAAGCTCGTTTGCCTACGGaagttgtaaataaatttaaaaatgttgacTCTGAAATTGATCTAGACGAGAGATTTCTTGAACTCTATAAATTCTGGAAAAATATacaatctgaaaaaaatatatctatgaaTGAATCTACTTTTCAAAATAATCTGCCTAGTAACTTAAATCAAACTATTTCTGACATAATTATTAATGAAGAGTTTTGGTTAGCTAATGATGAAGCAATTGAAGCAATAGTCGAATCAGATGGGTCTTTAAGCTTAGTGAATTTAATATCTCAGCCATCTACATCAAAGCAACACCAAGCAAAAGATTCAGATATAAATACAGATTTAAACCTTCATGATCCACAACAACCAGACTACAAAACACCAGTTAAAAAATCAGGAGACAATACCACAGGTTCAAAATATCCTACACCTTTTAAAAATGCTCTTTTTTGGCCAGGAAATATAGAAAAGAAGAGGAAGACTACCACAGATTGCAAGGGGCAATTAAAAAAACCAAAAATGTATCCCACCGTAGCAACTAGCGACCAGTTTATGGAATATCAACGACGAGTTGAGGCAGAGAAACTAGCTAAAGAGAATGATAAATTAGAGAGAGctcaaaagaagaaagaaaaaagtcAGCAAACTAAGTCAAAAAAGAAGACAAAAGTTGAAATCAATACAGATATTACAGAAGCAAAAGAAAAAATGGAGTACCCAGAAGGGGTGTTTGTTGTTGTACAATATGAAGGAGAATATTTTCCCGGAATAGTGATGGAAAATTTAAATGATAACATAAAAGTAAAGACAATGACAATGAGTGGAAGTTACTGGAAATGGCCGGAGAAAGATGATATCTTGATCTATGATATTACAGACATCATGTGCAAAATCGAAAGTCCAGCTCTCATGTCTAGCCGTGGGACTTATGATGTTCCGAAAATAAATCAACTGCGAAATCAAAACAATCTGTGA
- Protein Sequence
- MSDKKRLKYSQENMKKALRDIREKKMSINQAAKSYDIPKTTILDRLKDKYKNPGNIGGPTVLTSSEEMYLVKWILELGEVGFPITKTQLLDSVTKLIKSLGRQNPFKDDQPGKKWYNGFLARHPEVSKRVPQSLTTCRAIVSENNIRSWFSKIRQYFVDNKLIELLQDPKRIFNCDESGFYLSPQEKQVLVRKGSKKVYNRTVNDEKECLTVLLTVAADGAIPPPLIMFPYKRYVPSYITANMPKGWGMGHSDSGWMTSETFYEYITNVFHPWLKEKGIQMPVVLFLDGHSSHININLSEYCKEHEIILIAFYPNATHRLQPLDVGVFYPLKNCWRNDVREWRMANSGKKMQRSDFPIILYKSINATLSPAIIAKAFQTCGLYPFNEDAIDYSKLIKEISNEENNNLALSTANQHVTHKTDGSQPLNLLSEVEARLPTEVVNKFKNVDSEIDLDERFLELYKFWKNIQSEKNISMNESTFQNNLPSNLNQTISDIIINEEFWLANDEAIEAIVESDGSLSLVNLISQPSTSKQHQAKDSDINTDLNLHDPQQPDYKTPVKKSGDNTTGSKYPTPFKNALFWPGNIEKKRKTTTDCKGQLKKPKMYPTVATSDQFMEYQRRVEAEKLAKENDKLERAQKKKEKSQQTKSKKKTKVEINTDITEAKEKMEYPEGVFVVVQYEGEYFPGIVMENLNDNIKVKTMTMSGSYWKWPEKDDILIYDITDIMCKIESPALMSSRGTYDVPKINQLRNQNNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00751951;
- 90% Identity
- iTF_01333659;
- 80% Identity
- -