Basic Information

Insect: Heliconius sara
Gene Symbol: -
Assembly: GCA_917862395.2
Location: OU860794.2:8670736-8675907[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3e-07 2.2e-05 25.0 2.9 1 23 10 32 10 32 0.97

2 14 4.1e-05 0.0031 18.3 6.7 1 23 38 60 38 60 0.97

3 14 9.4e-05 0.007 17.2 5.6 1 23 66 88 66 88 0.97

4 14 2e-07 1.5e-05 25.6 1.9 1 23 94 116 94 116 0.98

5 14 1.9e-05 0.0014 19.3 8.1 1 23 122 144 122 144 0.98

6 14 3.2e-06 0.00024 21.8 6.6 1 23 150 172 150 172 0.98

7 14 2.7e-06 0.0002 22.0 5.8 1 23 178 200 178 200 0.98

8 14 2.1e-05 0.0016 19.2 3.3 1 21 206 226 206 227 0.94

9 14 8.9e-06 0.00066 20.4 7.1 1 23 246 268 246 268 0.97

10 14 1.2e-06 9.2e-05 23.1 6.0 1 23 274 296 274 296 0.98

11 14 1.2e-05 0.0009 20.0 7.8 1 23 302 324 302 324 0.97

12 14 1e-06 7.4e-05 23.4 4.1 1 23 330 352 330 352 0.96

13 14 0.00088 0.065 14.1 0.6 1 23 359 381 359 381 0.95

14 14 0.00068 0.051 14.5 3.8 1 23 392 414 392 414 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3e-07	2.2e-05	25.0	2.9	1	23	10	32	10	32	0.97
2	14	4.1e-05	0.0031	18.3	6.7	1	23	38	60	38	60	0.97
3	14	9.4e-05	0.007	17.2	5.6	1	23	66	88	66	88	0.97
4	14	2e-07	1.5e-05	25.6	1.9	1	23	94	116	94	116	0.98
5	14	1.9e-05	0.0014	19.3	8.1	1	23	122	144	122	144	0.98
6	14	3.2e-06	0.00024	21.8	6.6	1	23	150	172	150	172	0.98
7	14	2.7e-06	0.0002	22.0	5.8	1	23	178	200	178	200	0.98
8	14	2.1e-05	0.0016	19.2	3.3	1	21	206	226	206	227	0.94
9	14	8.9e-06	0.00066	20.4	7.1	1	23	246	268	246	268	0.97
10	14	1.2e-06	9.2e-05	23.1	6.0	1	23	274	296	274	296	0.98
11	14	1.2e-05	0.0009	20.0	7.8	1	23	302	324	302	324	0.97
12	14	1e-06	7.4e-05	23.4	4.1	1	23	330	352	330	352	0.96
13	14	0.00088	0.065	14.1	0.6	1	23	359	381	359	381	0.95
14	14	0.00068	0.051	14.5	3.8	1	23	392	414	392	414	0.99

Sequence Information

Coding Sequence: ATGAGGTCGCACACAAACGACACCCCGTTCAGGTGCGACCTGTGCGGCAAGTCCTTCACCAGGAAGGAACATTTCACCAATCACATATTGTGGCACACCGGTGAAACTCCACATCGATGCGACTTCTGCTCTAAAACCTTCACACGTAAAGAGCACCTGCTAAATCATGTGCGTCAGCATACAGGGGAATCGCCGCATCGATGCAATTTCTGTGCGAAGTCCTTCACAAGACGAGAACACTTGGTCAACCATGTGCGACAACACACCGGCGAAACGCCTTTCCAGTGCGGATACTGTCCTAAAGCTTTTACTAGGAAAGATcatttagTGAATCATGTTCGTCAACACACGGGAGAGTCCCCACATAAATGTACATTCTGTACGAAATCATTTACACGCAAAGAGCATTTAACAAATCATGTGCGACAACACACGGGGGAATCCCCTCATCGATGTACATACTGCGCCAAGTCTTTCACTAGAAAGGAACATCTTACAAATCATATAAGACAGCATACGGGCGAGACTCCCCACAAGTGCACGTACTGCCCGCGCGAGTTCTCGCGCAAGGACCACCTGCAGCAGCACGTGCGCCAGCACACGGGCGACGCGCCGCACACCTGCAGCTACTGCAGCAAGAGCTTCACCAGGAAAGAGCACCTCGTTACGCACGCCAGGTACTGGGATTGGGGAGACGATGGAAAAGTTCATTTACAACATACTGGCGAAACTCCATTCAAATGCACGTACTGCTCGAAGTCGTTCTCACGTAAGGAGCACCTCACGAACCACGTGCACCTTCACACTGGTGAAACACCGCACAAATGTCCGTTCTGTACTAAGACCTTCTCTAGGAAGGAACATTTAACTAACCATGTCagaATACACACAGGCGAATCCCCTCACAGATGCGAGTTCTGTAACAAAACGTTCACAAGAAAGGAGCATTTGACAAATCATTTAAAGCAGCACACGGGTGATACGCCGCACGCGTGCAAGATATGCTCCAAACCGTTCACCAGGAAAGAACATTTAGTGACACATATGAGATCCCACAGTTGTGGAGAGAGACCACACATTTGCGGCGAATGCGGAAAATCCTTCCCCCTCAAGGGTAATCTGCTGTTCCACGAGCGGTCACACAATAAAGGCGCTAATGCGTCAAACAAAACGTTCCGATGTGACGTGTGTTCCAAGGAGTTTATGTGCAAAAGTAATTTAGCATCTCATCGAAGAACCCACACAGAGACGGGCGAGGGCACTACAACTACAGAGCCCACACCTGAAAATGAAGATTGTGGAGATAAAGAGTCACCAGAAAGACCTGAGAGAAAACACGATACAAGagcGTCATCAGAAAGCAGAGCTACAGAAGCCACTGCTACACAAAATCCATCGCCAAATCCAAACCCAACTGTCATGCAAATTAATAGCCAGCAAGTCCGAACGGGCCCTACGACCACCACCAGCGTGGCAACAGGCACGTTCACCCACACTGCCACCACACAGCACCACGCCTCTACCAGTATAGCCCACCATCCTGTTACTGTGAATTACTAG
Protein Sequence: MRSHTNDTPFRCDLCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCTFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRQHTGETPHKCTYCPREFSRKDHLQQHVRQHTGDAPHTCSYCSKSFTRKEHLVTHARYWDWGDDGKVHLQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCNKTFTRKEHLTNHLKQHTGDTPHACKICSKPFTRKEHLVTHMRSHSCGERPHICGECGKSFPLKGNLLFHERSHNKGANASNKTFRCDVCSKEFMCKSNLASHRRTHTETGEGTTTTEPTPENEDCGDKESPERPERKHDTRASSESRATEATATQNPSPNPNPTVMQINSQQVRTGPTTTTSVATGTFTHTATTQHHASTSIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00778898;
90% Identity: iTF_00778898;
80% Identity: iTF_00782798;