Basic Information

Insect: Heliconius nattereri
Gene Symbol: -
Assembly: GCA_013403645.1
Location: JAAIXI010000234.1:1540512-1551116[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.1 75 4.2 3.4 1 23 267 289 267 289 0.96

2 14 0.22 15 6.3 0.9 1 19 339 357 339 360 0.84

3 14 0.0043 0.3 11.7 0.5 1 23 378 401 378 401 0.93

4 14 0.25 17 6.2 3.0 1 19 438 456 438 457 0.93

5 14 3.3 2.2e+02 2.7 2.2 1 23 464 486 464 486 0.87

6 14 0.29 20 6.0 2.8 1 23 734 756 734 756 0.91

7 14 1.9 1.3e+02 3.5 0.6 1 23 807 828 807 828 0.84

8 14 0.064 4.3 8.1 2.3 5 23 872 890 869 890 0.91

9 14 0.0077 0.53 11.0 0.3 2 23 906 927 905 927 0.96

10 14 5.2e-07 3.6e-05 24.1 1.8 1 23 933 955 933 955 0.98

11 14 4.2e-05 0.0029 18.1 0.4 2 23 961 982 960 982 0.96

12 14 0.00085 0.058 14.0 2.1 2 21 989 1008 988 1013 0.91

13 14 4.2 2.8e+02 2.4 0.2 1 20 1014 1033 1014 1033 0.87

14 14 0.00027 0.019 15.5 0.1 3 23 1046 1067 1045 1067 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.1	75	4.2	3.4	1	23	267	289	267	289	0.96
2	14	0.22	15	6.3	0.9	1	19	339	357	339	360	0.84
3	14	0.0043	0.3	11.7	0.5	1	23	378	401	378	401	0.93
4	14	0.25	17	6.2	3.0	1	19	438	456	438	457	0.93
5	14	3.3	2.2e+02	2.7	2.2	1	23	464	486	464	486	0.87
6	14	0.29	20	6.0	2.8	1	23	734	756	734	756	0.91
7	14	1.9	1.3e+02	3.5	0.6	1	23	807	828	807	828	0.84
8	14	0.064	4.3	8.1	2.3	5	23	872	890	869	890	0.91
9	14	0.0077	0.53	11.0	0.3	2	23	906	927	905	927	0.96
10	14	5.2e-07	3.6e-05	24.1	1.8	1	23	933	955	933	955	0.98
11	14	4.2e-05	0.0029	18.1	0.4	2	23	961	982	960	982	0.96
12	14	0.00085	0.058	14.0	2.1	2	21	989	1008	988	1013	0.91
13	14	4.2	2.8e+02	2.4	0.2	1	20	1014	1033	1014	1033	0.87
14	14	0.00027	0.019	15.5	0.1	3	23	1046	1067	1045	1067	0.93

Sequence Information

Coding Sequence: atggataataataataagaaacgaaatagaaaatctaaattagTGCCGCGCAAGTATTCAGATTCGGATGATGAGAATATTGCTCTTATGCAGcaAGAGATTGAACTTGAGCTGGCAAACATAAAAGCTCAGTCAATACTAAAGAAACTGAGTGCAAGTAATTTGAACAATGAAACAGATTTTCAAATTTCAGTCAAAGTTGAAATTGAGAATTGTGACGATGgttatgataataatgatgAACAGTATGATTTGATGCCAAATGAAgagaaagaaacaaaaaaatatgagtatTCAGTagttaatgattttatttctattaagacGGAGAAATCTGATGCCGTAGAAAGTACAAATAAACAGAAAGAAACAGAAGATGAAGATTTCTCTATACAAAAAGAAgaagtagtaaatatttcagatGTTGAATTGAGTTTAGCAGTAGGAGACGAAACAAAGTCATTTGGTTCTGATGATGATGGCAATGGTGAACTTCTCACTTCAATAAAGAAAACTGATTTTAGAGTAGAATCGGTTACAACTTTAGCTAAATCTACCAAAACGATACTTACTTACAGAATACCAGACAAAATGATTCGTGATGAATTTGAATTAGTTTGTAGACAAACAACTCATAGTGCTGacaaattattagaaatgcGCCTAAGGAATTATTATGCTAAGGGTGTAAGGGGTGTATTGAATAACTGTGAAATAGATATAGGTATCCaagaagctttaaaaaaatggaaaatgtgGCAGCTCGCCTTTTCTGCCGTTCGTGGGCCGCCGTTAATGTACATATGCAGTAAATGCAAATTGGGATTTTGGCATTTGCATGACTTTCGGGAACACCTCCAAGACCATGCGGATATGAATTACTCGTTTGTTAGCGAGGAACATCTGAGCTATGTTATAGGCCATCTTGGTAGAAAAGCGGATAAACAGTTCTTGAGTATAGATTCGGACTGCTGGAGATGCGGCAAAGGATTTAAATGCCATAacgatgttatatttaaatgcaatgGTTGTAACCGTTACTTCGAAACCTGCCTACTAATGTCTATACATGAGGCCACGTgcgaagaaaacaaaaataacttcgCCCAATCAGAGAATATGGATATACAACATAAATGCCCTGTCTgtccatacaaatattttagggAAGAGGATATACAAAGGCACTTGATAGGTCTACACACGGTTAGATCTGATGTTCCGATATTCTGGTCCACTAAGAAATGTAAGAAATGCGATGGGATTGTCAATCATTCTTCTTTGCACGAGTGTAGCGAAAGACCAGGAATCCAcgtttgtaaattttgttcTAGAAGGTTCCaaagtaaacataatattatgattcaTTACTGGGTTTCGCCACATAATTTTGAATGCCGGATTTGCAAGAAAGTGCTGAAAAAGGAGTGCATGGAGCAAAATCACTTGCTAAGTCATTCCAAAAGTTACACTGCAATGTATAAGTGTTTACTCTGCAAGGatgatctatatattttagacaaGAAGTTAGAAAAGcaacataattataacacTCACAAGAAGAGGTTCACGAGGACTATTTTTGAAAAGGTAATCGTGCCTAAAAccttattaaagaaattgaaaaataataaaaagtttatccGAAAAGAAATGTTGGatataccaAATTCAGATTCTAAACTTGAAAGCAATAATGACTCAAATGTTATCAATGATGATACTAGAGTTTTAtcaaaatgcggcgttaagttctgtcaACCAACACAGAGTGTCTCTACATCAGGCGATAAATCGAAACCAGAAAGTATTGCCACTAAGAACCCCCCATCTATCTCAAATAATAAAGACGATACAACacccattaaaaatattaaacaaaaaatcggaattgaaattaataatgatactGAAACTAatccttataaaattaaaagaaaatctgaAATTCCAATAGAAAATGATTCGGAAATAAAGAGAATGGCCGATTTGGatttgattaatataaaagaggAACCAGTGGATTTTCTAGATATTGTCGCTGTAGGAATTGAAACAGAAGAAGTTGAGGAAGATAATGATGATAGTATAAATTTCAAACCCGAAAAACTAGTAAAAGAATACGAAGTCAACATAAGCAATTATCAAAAATACGTCGGcgtgaaatatatgaaaatgataCATGacgataaatatacatacagttGCTCGAAATGCAAGCGCGCGTATCAGTCTTCTAAAAAGTATCTCAACCATTTTGTTTTGCACGGTTACAACAGTAACGCGTGCCCGCAGTGTCTTGCGGAATTCCCGAATGTTGAACTACTGTGTTGCCATGTCAAtatgcatattaaatataattatatgagtGTACATTCGATCCGTAATGAAAGTGCCACAGGGGAAAGTATTAGAAAGTTCCAATGCAAGATTTGTCAGGAAATTTTAGTTGTATCCCAGTTTTTCACGCATTGGGAGAAACACTTAGTGGTGCAGGGGAAAGGGCAAGACCGTGTTAGCGCAGTTGATATGGATGGAAAGCCGTTTTTGAAGAACATGATTGTTTATATACAACAACCAGAGAAAGACACATTCAAATCCAAAACTTGCATACAATGtaagaaaaagttttttagaaaaaatgatattaaaaggCACATCATACAACATCTCCTTGACGATGCCTATGCAGAACAAATAAAGTATGGAAATTTAAAGTGTCAGATATGTGGGGCTGGATTCCAAACAGGGGATAGATATAAACGCCATCTGAGAGACCACGCGTCTCTTCCTGTATACAGATGTGAAATGTGCGACAAAGCCTTCAGCGACTCCTCAAACTTCTCCAAACACAAGAAAGTGCACAATCTGCACGTCTTAATATGTGATATTTGTGGGAAGAAGTTTCAATATAAGCCGTATttgattaaacatttaaaattacatgAAACGATGAAACCAATTGAGTGTGagaaatgtacaaaaaaattttacacacAATCCGCTTacagaaaacattttaaaaagagtAACGTGCACTTTAGGTGTCAGATTTGCAGATTGCTGTTTAACAGTATTAAAGAGAGATGGGATCACATGTGGGAGgtacataaaaaaagaaactgtcAAGCGGACTGTCCGATATGCGGCGCCAGCTACAGGAAGAAGACTGACGTGAAGAGACACATGGCGGGGGTGCACGGCGAGAAATCACTCGCGCATTACTACGGATGA
Protein Sequence: MDNNNKKRNRKSKLVPRKYSDSDDENIALMQQEIELELANIKAQSILKKLSASNLNNETDFQISVKVEIENCDDGYDNNDEQYDLMPNEEKETKKYEYSVVNDFISIKTEKSDAVESTNKQKETEDEDFSIQKEEVVNISDVELSLAVGDETKSFGSDDDGNGELLTSIKKTDFRVESVTTLAKSTKTILTYRIPDKMIRDEFELVCRQTTHSADKLLEMRLRNYYAKGVRGVLNNCEIDIGIQEALKKWKMWQLAFSAVRGPPLMYICSKCKLGFWHLHDFREHLQDHADMNYSFVSEEHLSYVIGHLGRKADKQFLSIDSDCWRCGKGFKCHNDVIFKCNGCNRYFETCLLMSIHEATCEENKNNFAQSENMDIQHKCPVCPYKYFREEDIQRHLIGLHTVRSDVPIFWSTKKCKKCDGIVNHSSLHECSERPGIHVCKFCSRRFQSKHNIMIHYWVSPHNFECRICKKVLKKECMEQNHLLSHSKSYTAMYKCLLCKDDLYILDKKLEKQHNYNTHKKRFTRTIFEKVIVPKTLLKKLKNNKKFIRKEMLDIPNSDSKLESNNDSNVINDDTRVLSKCGVKFCQPTQSVSTSGDKSKPESIATKNPPSISNNKDDTTPIKNIKQKIGIEINNDTETNPYKIKRKSEIPIENDSEIKRMADLDLINIKEEPVDFLDIVAVGIETEEVEEDNDDSINFKPEKLVKEYEVNISNYQKYVGVKYMKMIHDDKYTYSCSKCKRAYQSSKKYLNHFVLHGYNSNACPQCLAEFPNVELLCCHVNMHIKYNYMSVHSIRNESATGESIRKFQCKICQEILVVSQFFTHWEKHLVVQGKGQDRVSAVDMDGKPFLKNMIVYIQQPEKDTFKSKTCIQCKKKFFRKNDIKRHIIQHLLDDAYAEQIKYGNLKCQICGAGFQTGDRYKRHLRDHASLPVYRCEMCDKAFSDSSNFSKHKKVHNLHVLICDICGKKFQYKPYLIKHLKLHETMKPIECEKCTKKFYTQSAYRKHFKKSNVHFRCQICRLLFNSIKERWDHMWEVHKKRNCQADCPICGASYRKKTDVKRHMAGVHGEKSLAHYYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00782252;
90% Identity: -
80% Identity: -