Hnat001329.1
Basic Information
- Insect
- Heliconius nattereri
- Gene Symbol
- Rfx1
- Assembly
- GCA_013403645.1
- Location
- JAAIXI010000250.1:928019-942932[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-37 1.1e-33 115.8 0.1 3 78 252 327 250 328 0.97 2 2 1.6 1.5e+04 -3.3 0.0 24 32 690 698 677 704 0.69
Sequence Information
- Coding Sequence
- ATGTCTGAGATGGGTTTTGAGAATGTGTTTTACCTGGAGAGTAAGTATTGTGGGAAGAGAGGAGGGATGTGTTGCCAGGTTACACCCCAGATACCCGGCTCAGAGCTCGGCTTGAAACAGATCAATAACATCTCTATCACCTTGGAGAGTGTTATGCAAGATTTTGCAActctttattatgtttatccATATTTTGAGTGCGCGGGCGACGAGGTGCTGGTTGAGTCGTCACCGCCCGCCTCGCCCGTCATGGCAGCGCGGTTGGCGCCCTCGCAGGGCGCGGGAACAGGTGGCACATCACCTGCTGAAGTGCAGGAGCTCATCGTTTCAAGTACGGTGGTCAAAGTGAATGGTGATAGTTCGGGGCATTCTAGTCCTACGACAGAGGCCCAGCACACTTACATAGTTACCATTGACGACGCTTGGGAACGAGATCCGCACGTGAAGTCTGAGGTGCAGAGTGATCACGAAAgtGAGGGCGGCAATGGCGTCAACTACCACGTCCAGTATGTGGAGCCCCAGGAGATATATACACAGACTGGACATCAAACTCATATGGAGACACTCCGCACGTACCCGGTGTACAACGTGACGAGTGTGGGTGCGGTGGCGGAAGGGGGCGCGGGTGGAGGTGGGGGCGCGGGGGCGGGCGCGGGGGTGACGGCGGTCACGGCTGTCACCGAGGAGTGGGGGGAGTTCGCGTTCGGCGCCGAGCCGCCCGCGTCACCCGCGCCCGCGCCGCGCATGCCGCCTGCCACCGTGCAGTGGCTGCTGGACCACTACGAGACGGCCGAAGGTGTATCCCTCCCCCGCTCGACGCTGTACGCGCACTACCTGCGCCACTGCAGCGCGCACCGCCTCGAACCCGTCAACGCGGCCTCCTTCGGCAAGCTCATCCGCTCCGTGTTCGTGGGCCTGCGCACGCGCCGCCTCGGCACGCGCGGCAACTCCAAGTACCACTACTACGGCATACGCGCCAAAGCTAGCGCGCGTGCCGACCACGACGTGGACGACCACGAGCGCGACCACAGTGACCACGGCGATCACGTGAGACATGGTATCGCCACCGGATTGAAGGAAGACGATGATGATCAGGATCATGTAGAACAGAGCCCTGGCGTGGGCACAGGGGGGGCGGCGGGTGCGCACCGCCAGTACCTGGGCGCCGTGAGCGCGCCCGACCCGCCCGACCTACACGTGGACGGCCTACCTGAGGATATACCGCACGACGCGCTGCGGCAGCTAAGTGAACATCATAGACAACACGGTGTGGAGTTCCTGGAGGCCGTGGCGGCGCTGGACACGGGCGGCGTGGAGCGCTGCCGGCGCGCCTTCTGGCGGCGCGTGGGGCGCGCGGGCCTGCGCCTGACCGCGCGTCGCGACGTTTGCGCGTGGCTGCGGCGCGCTGAGCTGCGCCTGCACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGCCCCATCCCGTCCGCGCTCACGCAGGCCATCCGCAACTTCGCTAAGAGCCTGGAGGGTGCGCTGCGGGCCGGCGCTGGCGCGGCGCCCCCGCTGGCGGCACGCGCTCAAGCCGGCGCCGCCGCCGCGCTGGCCGCCGCGCTGCGCCGCTACACCTCTCTCAACCACCTGGCGCAGGCGGCGCGCGCCGTTCTCAATAACCAGCACCAGATACAGCagatGCTATCGGATCTAAACCGTGTGGACTTCCGAGTGGTGCGCGAGCAAGCGGCCTGGGCCTGCGCGTGCGGTAGTGCTAACACCGCGCACAAATTAGAAGCTGAttttaaggtaaaatataattatttattattatttttagcttgacactgtatctcgcatatagcagtgttATTACATGCGCGTCTAGGGCGCGGCGCGCCGCTGGAGGCGTGGGCGGCGTGGCTAGAGGCGAGCGTGCGCGGCGCGCTGGCCCCTCACGAGCGCCGCGCCGACTACACGCCGCGCGCGCGCCGCCTGCTGCTCGACTGGTCCTTCTACTCGTCGCTGGTCATCCGCGAGCTCACCCTGAGatCTGCCGCATCGTTTGGCTCGTTCCATCTAATCCGGCTACTCTATGACGAGTACGTGAGTTTCCTAATCGAGCGTCGCGTAGCAGAACACCGTCGAGAACCGCCCATAGCGGTTATGCAGAGAGCGATGGATGACGACGACGAGCTACCTGAACACGACCCACACGAGCAGAACGACCTGCACGACCCTCTCGACCCACATGAGCAACACGACCCGCTCGACCCACGTGACCAACTCGAGACACTCGAGCCGACGCGCTCAGAAGAGGAAGATGCTGATCACGATTGGGATTGGGAAGATGACGAAGAACCAGATGTTAAACGAGTAAGACTTGATGAATAa
- Protein Sequence
- MSEMGFENVFYLESKYCGKRGGMCCQVTPQIPGSELGLKQINNISITLESVMQDFATLYYVYPYFECAGDEVLVESSPPASPVMAARLAPSQGAGTGGTSPAEVQELIVSSTVVKVNGDSSGHSSPTTEAQHTYIVTIDDAWERDPHVKSEVQSDHESEGGNGVNYHVQYVEPQEIYTQTGHQTHMETLRTYPVYNVTSVGAVAEGGAGGGGGAGAGAGVTAVTAVTEEWGEFAFGAEPPASPAPAPRMPPATVQWLLDHYETAEGVSLPRSTLYAHYLRHCSAHRLEPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKASARADHDVDDHERDHSDHGDHVRHGIATGLKEDDDDQDHVEQSPGVGTGGAAGAHRQYLGAVSAPDPPDLHVDGLPEDIPHDALRQLSEHHRQHGVEFLEAVAALDTGGVERCRRAFWRRVGRAGLRLTARRDVCAWLRRAELRLHQRAVELLLPDVLRPIPSALTQAIRNFAKSLEGALRAGAGAAPPLAARAQAGAAAALAAALRRYTSLNHLAQAARAVLNNQHQIQQMLSDLNRVDFRVVREQAAWACACGSANTAHKLEADFKVKYNYLLLFLA*HCISHIAVLLHARLGRGAPLEAWAAWLEASVRGALAPHERRADYTPRARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVSFLIERRVAEHRREPPIAVMQRAMDDDDELPEHDPHEQNDLHDPLDPHEQHDPLDPRDQLETLEPTRSEEEDADHDWDWEDDEEPDVKRVRLDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00780008;
- 90% Identity
- iTF_00781554;
- 80% Identity
- -