Hmel007845.1
Basic Information
- Insect
- Heliconius melpomene
- Gene Symbol
- -
- Assembly
- None
- Location
- Hmel206001o:13376236-13386109[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.9 1.3e+02 3.4 0.2 1 14 252 265 252 270 0.87 2 10 10 6.9e+02 1.2 0.4 10 23 309 323 308 323 0.91 3 10 0.014 0.95 10.2 1.3 2 21 328 347 328 348 0.92 4 10 0.00036 0.025 15.1 1.3 2 23 364 385 363 385 0.94 5 10 9e-05 0.0063 17.0 0.3 1 23 390 412 390 412 0.98 6 10 1.6e-05 0.0011 19.4 4.5 1 21 421 441 421 446 0.95 7 10 0.00081 0.056 14.0 2.4 1 23 454 477 454 477 0.93 8 10 0.0049 0.34 11.6 0.3 1 23 483 506 483 506 0.96 9 10 0.023 1.6 9.5 0.5 3 19 520 536 518 537 0.89 10 10 0.0043 0.3 11.7 0.9 1 23 550 573 550 573 0.98
Sequence Information
- Coding Sequence
- ATGAAAGAAATAAATATAAATATTGAGGGTTACAATGAAAATGGTGTTTGCGTTGGCTGTCTAAATTACAACCGTAATATGCTTTGTAATAAACATGTAAGAGAATGTTTTAAAGTATTAGCCGATATTGATGTCCCAGAGGGAATAGTAATTAGAATATGTTGGGAGTGTGATGCATATATAAATAACACAATAAAATTTAAACAACAAATATTAAAATCTTATCAAGCGCTTATTGAATATTCTGAAAAGCATACATTTCTCAATGATCCCACTGATTTATCGAAACAAGCGATTCAGAGATTTTCAAGTCATTTCTATTTAGATACTGAGGAAGTAAAAGAAGAACCTATTGACAGTATACACGATATTAAAGAGGAAATCGATGATACATTGGATAAAGTTGAATTGGAAATCCCAGAACTAACCGAATTACCAGAAATTGATGTAAAAGAAGAAATACATCAAGAAGACAATATAAGTTTAGATTTTTACGAAGATTTGCCTAAACATAGTGAGACAGATGATGATATAGTCTTATCCAAGCTTAAAACTGACAAAGAAGTTAAGAAAAAGAAGAAAAAAAAGAAGAAAGATAGGAGTAAAGAGGAGAAGAAAGAACTAAAAGACAAAAAAACGCGGCGTTTACTAAATTTACCGGAAACACTAGTAGAATTATATACAATGACAGAAGAAGAGATGTGGTCAATAAGAGAAAGAGATCTTTCCAGTGGGGAATTTCAGAAAATAAAATACAAATGTGAATTATGCCTTATAGGATTTAATACTAAAAAGTTGAAGGACTTACATGATAGTGGGAAGCATTTTTCAAAAGCAGAGGATGATTACACTTGTGATGTTTGCAAATCACATTTCTTGACGAAAGAAAATATTAAATTTCATAGAAAATTACATTTATCTGCTTTTAATACTAGATCAAAACTATCGTACCATAGAACTGTGGCCCATCAAGAAAAACCTCAATGTGACTGTTGTGGGAAAATATTTGCAAATAAAATGACATTAAAATATCATTTGAAATTATTACCAAATAATAAAGAAGAAAAGCCAAATGAGAAAATGTTTATTCCTTGCAAAGGTTGTAACAAAGTGTTTCATTCGAAGAAAAGTTATAGGTCGCACGTCGTTATTCATGAAGGCGTAACGTACCCGTGTCCTATATGCGGTAAACTATTCCAATGGAAAAGGAATCTCGCTCGCCACACTAGGAATCATCGAGAAAGGGAGAATGGGGCTTTATACCAATGCAGGGAATGCGGAAAGAGCTTCTCCAGTCGAGATTGTTACAACAATCATATGAAACTGAGTAAAAAACATGTGGACGATAGCAGTTATATACATACTTGTAACTTCTGCGGTAAAAAATTCGCAACGAAATGGTGTATGATAGACCACATAGACTGGGATCACTTGAAACGTATCAAATATCAATGTAGAGTGTGTTTTAAGCCATTTAAAACAGCAAAAATTATGGTGGCCCATATGAACAATATTCACGAAGGGAAGAACAAGAAAGAGCCAGATGGTGAACATTTATGTGATGTATGTGGGAAGTCTTATAAGACAGTAAAACGACTAAAAGGCCACGTGTGGGCGATGCATACGAACAGATCGAATACAAAAAGTTTTAAATGCACACTATGTCCCGCCACTTTCTCCTGGCAGACATCTATATATAAACATATGAAGATGATGCATTTTAGTAAACGTGCCAAGGTGGGTTATTAA
- Protein Sequence
- MKEININIEGYNENGVCVGCLNYNRNMLCNKHVRECFKVLADIDVPEGIVIRICWECDAYINNTIKFKQQILKSYQALIEYSEKHTFLNDPTDLSKQAIQRFSSHFYLDTEEVKEEPIDSIHDIKEEIDDTLDKVELEIPELTELPEIDVKEEIHQEDNISLDFYEDLPKHSETDDDIVLSKLKTDKEVKKKKKKKKKDRSKEEKKELKDKKTRRLLNLPETLVELYTMTEEEMWSIRERDLSSGEFQKIKYKCELCLIGFNTKKLKDLHDSGKHFSKAEDDYTCDVCKSHFLTKENIKFHRKLHLSAFNTRSKLSYHRTVAHQEKPQCDCCGKIFANKMTLKYHLKLLPNNKEEKPNEKMFIPCKGCNKVFHSKKSYRSHVVIHEGVTYPCPICGKLFQWKRNLARHTRNHRERENGALYQCRECGKSFSSRDCYNNHMKLSKKHVDDSSYIHTCNFCGKKFATKWCMIDHIDWDHLKRIKYQCRVCFKPFKTAKIMVAHMNNIHEGKNKKEPDGEHLCDVCGKSYKTVKRLKGHVWAMHTNRSNTKSFKCTLCPATFSWQTSIYKHMKMMHFSKRAKVGY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00621532;
- 90% Identity
- iTF_01182214;
- 80% Identity
- -