Hmel015053.1
Basic Information
- Insect
- Heliconius melpomene
- Gene Symbol
- TFDP1
- Assembly
- None
- Location
- Hmel201001o:11776277-11786806[-]
Transcription Factor Domain
- TF Family
- E2F
- Domain
- E2F_TDP domain
- PFAM
- PF02319
- TF Group
- Helix-turn-helix
- Description
- This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7 8.3e+03 -3.3 0.0 4 35 83 112 82 114 0.58 2 2 2.1e-23 1e-19 70.1 0.1 2 65 187 266 186 266 0.97
Sequence Information
- Coding Sequence
- ATGTCCCAGAATACTAGTATAGTAAATTTCCTTATACATGACGCCAATGGACAGCCTCAAATGGTTAAAGTAGTACAAAATACTCAAACTCTTGCTCAAATCAAAATTAAGCAAAACCCTTTGAAAGTATTGAAAGTATCAGCCTCTAAAGAAGGGTGTAATCAGATTCCCGTATATCAGCCTGTTAAATTAACAGGAATTAAGTGTGCTTCAAAATTAGTACAATTACCTGTTGATGCTTTATCAAGTCTGCAAAATATATCATCTAAAGTAGAGCCAGATTTGCCAACAAACAATATTATTCAAAGTGAAAATCAGCTAACAGAACTTAATGTTATACACACATTACCAGAGTTAGTTCCCATTTTGACCAAGTCAGAACCAATACAAAGTGACAAAAAGACACATTTACCAATTATAACTAAAGTAGAACCTGAAGATCATTCTATAGATAATCTCTCATCAACAATGTCACATGCATCAAGAAGAAGACATGACTCGGACAATGATCCTCCAGCCGAATACACTACAAAACGTCGCAAGCACGCGGACAAAGTTGGAAAAGGACTAAGACATTTTTCAATGAAAGTATGTGAGAAAGTAAGGAATAAAGGCTTTACCTCATACAACGAGGTGGCAGATGAGCTGGTTTTAGAATTTGCTGCGGGAATGCATGGTTCAGCTGATAGCCAACAATATGATCAAAAGAATATACGAAGAAGAGTATATGATGCCTTAAATGTTTTAATGGCAATGAATATTATATCGAAGGAGAAGAAAGAAATCAAATGGCTAGGACTTCCAACGAATTCAGTTCAAGAATGCACAGCATTAGAAAAGGAAAAACAAACAAAATTAGAGCAAGTACAGAAAAAAACGCAACAATTACAAGAATTAATATTACAACACATTTCTTTTAAAAGTTTAATACAAAGAAATAAAGAAGCAGAAAACAAAGGTACAAAACCTTCACCATCATCTGCCATACATTTACCATTTATTGTTGTAAATACAAGTGACAAAGCGTTAATTGACTGTAGTATCTCTAATGATAAGACAGAATACATGTTCAACTTTAACAAAAGGTTTCAAATTCATGACGATATTGTTATATTAAAAAAGATGGGACTATTATTTGGATTAGATAAGGGAGAATGTACAGAGGAGGATATTGAGAAAGTAAAAAGTATGGTACCAAAGTCTTTAGAGAGCTATGTAGAACAAATGGGTCGAGGGGTAAAGAATAATCTATCAGACATTCTTGATCAAGAAGATATGGAAGATGAAGGGGAAGAAGAGGACACAATAGAAGGAGAGCCTGAGGGTGACGAACAGGAGGCAGAGGGAAATGAGTTCAGTGAAGATAGTAGTGATGTAGACGTGTAA
- Protein Sequence
- MSQNTSIVNFLIHDANGQPQMVKVVQNTQTLAQIKIKQNPLKVLKVSASKEGCNQIPVYQPVKLTGIKCASKLVQLPVDALSSLQNISSKVEPDLPTNNIIQSENQLTELNVIHTLPELVPILTKSEPIQSDKKTHLPIITKVEPEDHSIDNLSSTMSHASRRRHDSDNDPPAEYTTKRRKHADKVGKGLRHFSMKVCEKVRNKGFTSYNEVADELVLEFAAGMHGSADSQQYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWLGLPTNSVQECTALEKEKQTKLEQVQKKTQQLQELILQHISFKSLIQRNKEAENKGTKPSPSSAIHLPFIVVNTSDKALIDCSISNDKTEYMFNFNKRFQIHDDIVILKKMGLLFGLDKGECTEEDIEKVKSMVPKSLESYVEQMGRGVKNNLSDILDQEDMEDEGEEEDTIEGEPEGDEQEAEGNEFSEDSSDVDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01079689;
- 90% Identity
- iTF_00780835; iTF_00781619; iTF_00774306; iTF_00782436; iTF_00457808; iTF_00457041; iTF_00621017; iTF_00777236; iTF_00779314;
- 80% Identity
- -