Hhim013013.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Heliconius himera
Gene Symbol
-
Assembly
GCA_013421065.1
Location
JAATLT010008642.1:60463-64051[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 1.1 82 4.1 3.6 1 23 165 191 165 191 0.90
2 8 0.037 2.8 8.7 0.1 2 23 219 241 218 241 0.91
3 8 0.0015 0.12 13.1 4.1 2 23 262 283 261 283 0.97
4 8 0.099 7.6 7.4 0.2 1 23 287 309 287 309 0.97
5 8 0.00056 0.043 14.5 0.7 1 23 314 337 314 337 0.93
6 8 0.0069 0.53 11.0 0.5 2 23 374 396 373 396 0.96
7 8 0.00035 0.027 15.1 5.4 1 23 402 424 402 424 0.98
8 8 0.00071 0.054 14.1 1.5 1 23 430 452 430 452 0.96

Sequence Information

Coding Sequence
ATGGACACCGAGTCAGATATAACATCATCCACAACACTAGTAAAATATGTTCCAATTAAAGAGGAATATGAGCATGTTGAATATTTGGAGTTTGAAGAAATGCCTGAAGAAAAACCacaactaaaaattataacggAATTAGCCAATATAAGTTCAGGTCCTTCAACACCAGGGGCCTCGAGTTCAGGGCCCCCCAGCCCTTTACGAAAATGgcctaaaaagaagaaaaaacatGAATTAAGTAAATTCTATAAACAATATACTAAAGAAAACTTAGCAGAAGCGATAAGAGTGGTTAGAAATGGTGAAATGAGTTGCACATACGCAGCTAATAAGTATGGCGTACCGAAGAAAACTTTGACGGTTAAAGTTAACTCGTTTAGTGATGCCGATGGCGACGAATCCACCAATAAGCATTACAAATTAATAGAAGAAATCAAAGTACTCCTAACACATACAACAGCCGTGCCGTTCAAAACAAAAACGACTAGATATTATTGTTTCTACTGTTCTACTGAAGGCCCTTGCTTTGAAGACACTGACGAACTTAGAGAACATACTAAAACAAAACACGAACATGAATGGactaaaatagaattatatatgAGACCACAATGGCTCaatgaagttataaaaatggATGTCCAAGATATACATTGTAAAATATGTCTAACAATGTTACCAGATTGGAATAATTTGTTCGTTCATTTGGCAGAAATACATAATTTAGAGTTTGATATGgcgtatactaaaattatacctTATGGTCTAAGTGCTAATTTAAAATGCTTTTTGTGTGGGCAGAGTTTTCACAATTTCGGACATTTGGACAGTCATATGAATAAtcattatagtaattatatttgttatgaGTGTGGTGACACCTTTCTTTCAGCCAGTCGCTTGGACAAACATTTGAGTGTACACAAAATTGGTAATTACCCTTGTGAATATTGTGATAAAGTGttcaaattagaaaaatatcgcTCAAAACATATAAGTTTAGTGCATATACAAGAAAATACAGTCAAATGTTTGTACTGTCAGGAAAAATTCCTAGGTATTTTCCAAAGGCATATACATGTAACAGAGAAAcataaagaaaaagttaaatacATGACTTGTGAATACTGCGGGAATAGTTATACATGGAAGCCATATTTTTTAGCGCATATGAAAAGAAGGCACGGttctgagaaaaaatataaatgtaaatattgtgaGAAGTGTTTCTTAATGAAGTATGAATTGAAGAACCACATGGTGAGGCATACGGGAGAAAAGAATTTTGTGTGTGGCTTGTGTGGGCTAGGCTTTACTAGGATGGTCAGCTTGAAAAAGCATTGTCAGACCCACGAAGAAGAGATTATTGAGTAA
Protein Sequence
MDTESDITSSTTLVKYVPIKEEYEHVEYLEFEEMPEEKPQLKIITELANISSGPSTPGASSSGPPSPLRKWPKKKKKHELSKFYKQYTKENLAEAIRVVRNGEMSCTYAANKYGVPKKTLTVKVNSFSDADGDESTNKHYKLIEEIKVLLTHTTAVPFKTKTTRYYCFYCSTEGPCFEDTDELREHTKTKHEHEWTKIELYMRPQWLNEVIKMDVQDIHCKICLTMLPDWNNLFVHLAEIHNLEFDMAYTKIIPYGLSANLKCFLCGQSFHNFGHLDSHMNNHYSNYICYECGDTFLSASRLDKHLSVHKIGNYPCEYCDKVFKLEKYRSKHISLVHIQENTVKCLYCQEKFLGIFQRHIHVTEKHKEKVKYMTCEYCGNSYTWKPYFLAHMKRRHGSEKKYKCKYCEKCFLMKYELKNHMVRHTGEKNFVCGLCGLGFTRMVSLKKHCQTHEEEIIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00457174;
90% Identity
iTF_00774435;
80% Identity
iTF_00779441;