Basic Information

Insect: Heliconius himera
Gene Symbol: -
Assembly: GCA_013421065.1
Location: JAATLT010014498.1:2831-14642[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.014 1.1 10.1 0.6 1 23 317 339 317 339 0.98

2 10 0.00034 0.026 15.1 7.2 1 23 346 368 346 369 0.95

3 10 0.042 3.2 8.6 1.8 1 23 373 395 373 395 0.97

4 10 0.038 2.9 8.7 1.8 1 23 400 423 400 423 0.97

5 10 0.0042 0.32 11.7 0.4 1 23 427 450 427 450 0.94

6 10 0.0062 0.48 11.2 0.5 3 21 464 482 463 487 0.93

7 10 0.89 68 4.4 0.4 2 23 540 562 539 562 0.94

8 10 0.0056 0.43 11.3 1.1 2 20 578 596 577 599 0.89

9 10 0.00038 0.03 15.0 0.2 1 23 605 627 605 627 0.97

10 10 0.00019 0.014 16.0 2.4 1 20 633 652 633 654 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.014	1.1	10.1	0.6	1	23	317	339	317	339	0.98
2	10	0.00034	0.026	15.1	7.2	1	23	346	368	346	369	0.95
3	10	0.042	3.2	8.6	1.8	1	23	373	395	373	395	0.97
4	10	0.038	2.9	8.7	1.8	1	23	400	423	400	423	0.97
5	10	0.0042	0.32	11.7	0.4	1	23	427	450	427	450	0.94
6	10	0.0062	0.48	11.2	0.5	3	21	464	482	463	487	0.93
7	10	0.89	68	4.4	0.4	2	23	540	562	539	562	0.94
8	10	0.0056	0.43	11.3	1.1	2	20	578	596	577	599	0.89
9	10	0.00038	0.03	15.0	0.2	1	23	605	627	605	627	0.97
10	10	0.00019	0.014	16.0	2.4	1	20	633	652	633	654	0.95

Sequence Information

Coding Sequence: atgcgcTGCTGTATTCCTTCTTGTAAGAATGATTCTAGAAATATTACTAAGTCGGAAGGGATTACTTTTCATGTATTCCCAACAGAACCTAAAGCTAGGGCAGCATGGTTAAAGGCCATTGGTAAAAATGATTGGTCACCAAAAGACAGGAGTGTGATATGCTCCGATCATTTCTTGTGTGaagatttatatgaaactagaAATGGGTTGCGAAAAGTCAAAATTGGAGCAGTTCCTATAACATTAcagGTGTGCCGAATCTGTTTGGGTAtggataaaaaattacattcattgaaaaagtataatttagaaCAAGCTTACGAATATCTCACTGGGATCATGccTTTCAATGATAATTtaccacaaaatctatgtaCAGAATGTGCACaaagattaataaattgtaataagtttAGAACTAAAAGTCTTAAAGCTTACTCTTTAATGTTAGAATTAATGGAGAGACAAGAAATTATAACAACAGAAAATTTAATATGCATCAATCGGGAACAGAACCTACTATCCTCTActctaaatcaaaaaatattctctCCAGACCACTGCGACTTATACATAGAATACACAGAACCTGAACAAATAACCAAATATGAAGAAATACAAGTAGACGAAATAAAAAGCGAGAAAAATGACGAAACCGACGCTATTTTTACAGAAATACATGAAAATGACAACGATAATGATTTCTCAATGAAAGATTATTCAACTGATGACAGTCTACcattaaaacaaacaaagaaaaaatcaaaaaaagtaaaaaaagttaagaaaataaagaaaaatgttgaaCCGAAAATAGACAGGCGTCGTAAACCTTTTCTAAATgaagatttaaatgaaactttattcACAGTGACCGATCTCTCTTTCGATGAACAGGTAGCGGAGATAGAGAAGAGAAGGGAGACATCAAACTTTAAGAATTCTGTGTTTAAGTGCACTGAGTGTTTTAAAGGATTTTTGGACGAAGATGCGTATAATGGACATATGACGAGGCATACAGATCAATGCGGTGAATATGTATGCAGCATATGCAAAACGCATTTCAAACATCCGCATGCGTTACGCAAGCATATAACGGCGCATCACACCCAACGGTTTAGTTGTAACCAGTGTCCGTATGTCACTACTCATAGACAAACGGCCAGACTGCACGAGAGATGGCATAAAGGAACAAAATATCAGTGTCCTCATTGTCAAGACGAATTTGttaAATTTACAACCTACATGGGTCACATACGTATAAAGCACCCGTCAGATTTTGTCTGTTCGTTGTGCGGATACAGTTTCGTCAGTGAAAAGGGTATTGAGTTACACAAGAAGTTGAAACACCGATTGGACGATGGATCGATACCGGAAGACGGTCCCCTCTGTGAGCTGTGTAATGTTCGTTTCGTGTCTCAAGACGCTTACAGGCGACACCTGCACGTCTCGGCGAGACATAATACTTGTGATTCtgaTTCAAAAGATTCCAACAAAACAAGAAGGGGTAGACGAACTAAGGagaaagaaaatgaagaaaataaatcgGAGAATTTAGACGATAATGACAAAAGGAAAATGTATCCGAGCCAAGTTAGGAAAGCAGAGGGGCCTATACCTTGTGAACAgTGCGGCCTCCAATTAGAAGATTCTAGAGCTTACCACGGCCATTTTAGACGAATGCATCCCGACAAGAATCGAACCAAGTACCCCTCGATGAAATCTCCGTGTATGTGCGAAGTTTGTGGACGGATGTTtcagAGCTACGCGCTGCTGAAGGACCACCGCTGGACGCACACGGGCGAGCGGCCGTTCGCGTGCGAGGCGTGCGGCAAGGCCTTCCGCATGCGCCAGCGCCTCGTGGCGCACCGCCGCGTGCACGCCGCGCGCCGCGCCTACGCCTGCCACCTCTGCGCCAAGACCTTCTCCACGCACAGCAACCGCCAGCGGCACATGTTTGTGAGTCTTTAA
Protein Sequence: MRCCIPSCKNDSRNITKSEGITFHVFPTEPKARAAWLKAIGKNDWSPKDRSVICSDHFLCEDLYETRNGLRKVKIGAVPITLQVCRICLGMDKKLHSLKKYNLEQAYEYLTGIMPFNDNLPQNLCTECAQRLINCNKFRTKSLKAYSLMLELMERQEIITTENLICINREQNLLSSTLNQKIFSPDHCDLYIEYTEPEQITKYEEIQVDEIKSEKNDETDAIFTEIHENDNDNDFSMKDYSTDDSLPLKQTKKKSKKVKKVKKIKKNVEPKIDRRRKPFLNEDLNETLFTVTDLSFDEQVAEIEKRRETSNFKNSVFKCTECFKGFLDEDAYNGHMTRHTDQCGEYVCSICKTHFKHPHALRKHITAHHTQRFSCNQCPYVTTHRQTARLHERWHKGTKYQCPHCQDEFVKFTTYMGHIRIKHPSDFVCSLCGYSFVSEKGIELHKKLKHRLDDGSIPEDGPLCELCNVRFVSQDAYRRHLHVSARHNTCDSDSKDSNKTRRGRRTKEKENEENKSENLDDNDKRKMYPSQVRKAEGPIPCEQCGLQLEDSRAYHGHFRRMHPDKNRTKYPSMKSPCMCEVCGRMFQSYALLKDHRWTHTGERPFACEACGKAFRMRQRLVAHRRVHAARRAYACHLCAKTFSTHSNRQRHMFVSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00458383;
90% Identity: iTF_00778300;
80% Identity: iTF_00779561;