Basic Information

Insect: Heliconius hermathena
Gene Symbol: -
Assembly: GCA_013403705.1
Location: JAAIXJ010000176.1:186161-197474[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.017 1.2 9.9 0.6 1 23 317 339 317 339 0.98

2 10 0.00042 0.029 15.0 7.2 1 23 346 368 346 369 0.95

3 10 0.051 3.6 8.4 1.8 1 23 373 395 373 395 0.97

4 10 0.046 3.2 8.6 1.8 1 23 400 423 400 423 0.97

5 10 0.0052 0.36 11.5 0.4 1 23 427 450 427 450 0.94

6 10 0.0076 0.53 11.0 0.5 3 21 464 482 463 487 0.93

7 10 1.1 76 4.2 0.4 2 23 540 562 539 562 0.94

8 10 0.00047 0.033 14.8 0.2 1 23 598 620 598 620 0.97

9 10 0.00023 0.016 15.8 5.3 1 23 626 648 626 648 0.97

10 10 0.00011 0.0079 16.8 4.1 1 23 654 677 654 677 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.017	1.2	9.9	0.6	1	23	317	339	317	339	0.98
2	10	0.00042	0.029	15.0	7.2	1	23	346	368	346	369	0.95
3	10	0.051	3.6	8.4	1.8	1	23	373	395	373	395	0.97
4	10	0.046	3.2	8.6	1.8	1	23	400	423	400	423	0.97
5	10	0.0052	0.36	11.5	0.4	1	23	427	450	427	450	0.94
6	10	0.0076	0.53	11.0	0.5	3	21	464	482	463	487	0.93
7	10	1.1	76	4.2	0.4	2	23	540	562	539	562	0.94
8	10	0.00047	0.033	14.8	0.2	1	23	598	620	598	620	0.97
9	10	0.00023	0.016	15.8	5.3	1	23	626	648	626	648	0.97
10	10	0.00011	0.0079	16.8	4.1	1	23	654	677	654	677	0.93

Sequence Information

Coding Sequence: atgcgcTGCTGTATTCCTTCTTGTAAGAATGATTCTAGAAATATTACTAAGTCGGAAGGGATTACTTTTCATGTATTCCCAACAGAACCTAAAGCTAGGGCAGCATGGTTAAAGGCCATTGGTAAAAATGATTGGTCACCAAAAGACAGGAGTGTGATATGCTCCGATCATTTCTTGTGTGaagatttatatgaaactagAAATGGGTTGCGAAAAGTCAAAATTGGAGCAGTTCCTATAACATTAcagGTGTGCCGAATCTGTTTGGGTAtggataaaaaattacattcattgaaaaagtataatttagaaCAAGCTTACGAATATCTCACCGGGATCATGccTTTCAATGATAATCTACCGCAAAATCTATGTACAGAATGCGCACaaagattaataaattgtaataagtttAGAACTAAAAGTCTTAAAGCTTACTCTTTGATGTTAGAATTAATGGAGAGACAAGAAATTATAACAACAGAAAATTTAATATGCATCAATCGGGAACAGAACCTACTATCCTCTACTCTAACTCAAAAAATATTCACTCCAGACCACTGCGACTTATACATAGAATACATAGAACCTGAACAAATAACCAAATATGAAGAAATACAAGTAGACGAAATAAAAAGCGAGAAAAACGACGAAACCGACGCTATTTTTACAGAAATACATGAAAATGACAACGATAATGATTTCTCAATGAAAGATTATTCAACTGATGACAGTCTAccattaaaacaaacaaagaaaaagtcaaaaaaagtgaaaaaaattaagaaaataaagaaaaatgttgaaCCGAAAATAGACAGGCGTCGCAAACCTTTTCTAAATgaagatttaaatgaaactttattcACAGTGACCGATCTCTCTTTTGATGAACAGGTAGCGGAGATAGAGAAGAGAAGGGAGACATCAAACTTTAAGAATTCTGTGTTTAAGtgcacggagtgttttaaaggATTTTTGGATGAAGATGCGTATAATGGACATATGACGAGGCATACAGATCAATGCGGTGAATACGTATGCAGCATATGCAAAACGCATTTCAAACATCCGCATGCATTACGCAAGCATATAACGGCGCATCACACCCAACGGTTTAGTTGTAACCAGTGTCCGTATGTCACTACTCATAGACAAACGGCCAGACTGCACGAGAGATGGCATAAAGGAACAAAATATCAGTGTCCTCACTGTCAAGACGAATTTGttAAATTCACAACCTACATGGGCCACATACGTATAAAGCACCCGTCAGATTTTGTGTGTTCGTTGTGCGGGTACAGTTTCGTCAGTGAAAAGGGTATTGAATTACACAAGAAGTTGAAACACCGATTGGACGATGGATCAATACCGGAAGACGGTCCCCTCTGTGAGCTGTGTAATGTTCGTTTCGTGTCTCAAGACGCTTACAGACGACACCTGCACGTCTCGGCGAGACATAATACTTGTGATTCTGATTCAAAAGATTCCAACAAGACGAGAAGGGGTAGGCGCACTAAGGagaaagaaaatgaagaaaataaatcgGAGAATTTAGACGATAATGACAAAAGGAAAATGTATCCTAGCCAAGTTAGGAAAGCAGAGGGGCCTATACCTTGTGAAcagTGTGGCCTCCAATTAGAAGATTCTAGAGCTTACCACGGCCATTTTAGACGAATGCATCCCGACAAGAATCGAACCAAGTACCCCTCGATGAAATCTCCGTGTATGTGCGAAAGCTACGCGCTGCTGAAGGACCACCGCTGGACGCACACGGGCGAGCGGCCGTTCGCGTGCGAGGCGTGCGGCAAGGCCTTCCGCATGCGCCAGCGCCTCGTGGCGCACCGCCGCGTGCACGCCGCGCGCCGCGCCTACGCCTGCCACCTCTGCGCCAAGACCTTCTCCACGCACAGCAACCGCCAGCGGCACATGTTTATTCACACAGGCCTCAAGCCGTTCAAATGCGAAATGTGCGGGAAGTGCTTCAAACACGCAAGCGAGAAACGCGCTCATGTAACATACGTTCATCTTAAGAAACCCTGGCCCAAAAGAGCGCGTGCTAAACGACGGGAAAGACCTgaACCAATGGAAGAAGTGAACGAAGAGGTCAACATGGCACCAATATGGCCTCAACACGAACTCAAACCTACATATTGTCAGCTTAgagcttaa
Protein Sequence: MRCCIPSCKNDSRNITKSEGITFHVFPTEPKARAAWLKAIGKNDWSPKDRSVICSDHFLCEDLYETRNGLRKVKIGAVPITLQVCRICLGMDKKLHSLKKYNLEQAYEYLTGIMPFNDNLPQNLCTECAQRLINCNKFRTKSLKAYSLMLELMERQEIITTENLICINREQNLLSSTLTQKIFTPDHCDLYIEYIEPEQITKYEEIQVDEIKSEKNDETDAIFTEIHENDNDNDFSMKDYSTDDSLPLKQTKKKSKKVKKIKKIKKNVEPKIDRRRKPFLNEDLNETLFTVTDLSFDEQVAEIEKRRETSNFKNSVFKCTECFKGFLDEDAYNGHMTRHTDQCGEYVCSICKTHFKHPHALRKHITAHHTQRFSCNQCPYVTTHRQTARLHERWHKGTKYQCPHCQDEFVKFTTYMGHIRIKHPSDFVCSLCGYSFVSEKGIELHKKLKHRLDDGSIPEDGPLCELCNVRFVSQDAYRRHLHVSARHNTCDSDSKDSNKTRRGRRTKEKENEENKSENLDDNDKRKMYPSQVRKAEGPIPCEQCGLQLEDSRAYHGHFRRMHPDKNRTKYPSMKSPCMCESYALLKDHRWTHTGERPFACEACGKAFRMRQRLVAHRRVHAARRAYACHLCAKTFSTHSNRQRHMFIHTGLKPFKCEMCGKCFKHASEKRAHVTYVHLKKPWPKRARAKRRERPEPMEEVNEEVNMAPIWPQHELKPTYCQLRA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00458383;
90% Identity: iTF_00778063; iTF_00782146; iTF_00781892; iTF_00780550; iTF_00779561; iTF_00782921; iTF_00776076; iTF_00782705; iTF_00775572; iTF_00775317; iTF_00780309; iTF_00774550; iTF_00774774; iTF_00776282; iTF_00779834;
80% Identity: iTF_00778063;