Hhim013015.1
Basic Information
- Insect
- Heliconius himera
- Gene Symbol
- -
- Assembly
- GCA_013421065.1
- Location
- JAATLT010008642.1:220-3494[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.054 4.2 8.2 0.7 1 21 78 98 78 99 0.95 2 21 0.0099 0.76 10.5 0.5 2 23 171 192 170 192 0.97 3 21 0.012 0.92 10.3 0.1 1 23 196 218 196 218 0.95 4 21 1.3 1e+02 3.8 0.7 1 15 223 237 223 246 0.78 5 21 0.034 2.6 8.8 0.2 1 23 252 275 252 275 0.94 6 21 0.0014 0.11 13.2 1.2 1 23 282 305 282 305 0.98 7 21 0.00023 0.017 15.7 0.7 1 23 312 334 312 334 0.97 8 21 2.3e-06 0.00018 21.9 3.0 1 23 340 362 340 362 0.98 9 21 6.8e-05 0.0052 17.3 0.6 2 23 366 388 365 388 0.96 10 21 0.00037 0.029 15.0 0.3 1 23 466 489 466 489 0.97 11 21 0.64 49 4.8 0.2 2 23 516 538 515 538 0.94 12 21 0.0024 0.18 12.5 1.7 1 23 560 582 560 582 0.98 13 21 1.9e-05 0.0015 19.1 0.9 1 23 586 608 586 608 0.98 14 21 0.00043 0.033 14.8 0.2 1 21 642 662 642 665 0.90 15 21 3.9 3e+02 2.4 2.0 1 13 672 684 672 686 0.89 16 21 2.2 1.7e+02 3.2 0.4 1 19 732 750 732 754 0.86 17 21 0.086 6.6 7.6 1.5 2 23 779 801 778 801 0.91 18 21 0.0048 0.37 11.5 1.6 1 23 823 845 823 845 0.98 19 21 5.6e-05 0.0043 17.6 1.1 1 23 849 871 849 871 0.98 20 21 0.15 11 6.9 1.1 1 23 905 928 905 928 0.92 21 21 0.0062 0.48 11.2 0.5 1 23 934 957 934 957 0.97
Sequence Information
- Coding Sequence
- ATGGACAGTGGAAGAACTGACTCaggttttctatttttaggcGAATGCGGTCAAACAGAAAACAGAAAGGATAAAACATCTGAATGTTTACTATCTAGTGACACAAAAGTTATTGAAAAACGACGTTACCAGCGAAGTGCGAGAGCTGAAGCaagatttataacaaaaaagaacGCCACAGCCTTGCTCGAGTGTTGGTCGTTATGTCCATTTAGGTGGAAAAGAAATAGATTTAAATGTGCTTATTGTGAAGATAACTTCACCGAATGCTCAGAGCTGCGAGAACATGTTAAAATATGCTCGATACAACACAGCGTCAAAGATATCTACAGTAAATTCAAAGAAATGTCACTGATAAACGTTGATATTACTGATGCCACCTGTAGAATTTGTGCCATGTCATTTGAAGGTATCCTTGAAATGCGAAATCACGTTATTGATCACGGGTATGATGTAGATACTACATATCCTGATGGCGTTCTGCCGTTTTGTTTGAACAAGGAATCTTGGAGATGTGTAATATGTTATCAATCTTTTAACAACTTTCTCAAATTGTACGAACACATGAACATACATTATCAGCATTACATATGCGCCACTTGCGGTAAAGGATACATGACAGCGCCGAGATTGCGCAAACATTCTGAAGTACATATAACTGGGACTTTTCCATGTGATAAGTGTCGGCGAATTTTCACCATGCGTGCAGCTAGAGATTATCATAAAGCTCACGCTCATGCTAAGGGACCTCGTTACGAATGTCCACAATGTAATATGAGGTTTGGAGGCTACTATGAAAGAATGAATCATTTGAATGAGGCTCATAGAGAAAAGGAAGTTTCTTACAAGTGTGCTCATTGTGAGTTATCTTTTAAAACTAGCGGAAAACGTGCAATTCATGTTAGATCCGTTCATTTTCCACAGCAACGCAACTTTGCTTGTCCTTTTTGTAAATGGCTATTTAAAACTGGTTATGAATTAAAAAGACATATGGTGAGACATACAGGAGAAAGAAATTTCTGTTGTACTATATGCGGAAAAACATTTCCAAGAAATAGAGCATTAAGAGCTCATTTCAAAACGCATGAAGACCTTAGTTGTAAATGGTGTGGAGTGATTTTCAAACAAAAGACACTTTTATTGACTCATCTGCGATCCAATCATCCGGAAATAAgtTCCGCTATTGCGGATTATGAAGAGTTAATAGTAGGAGTTAAACGCATTAGAAAGTTAAAGGAGAACGTCTGTGCGAGGCAAATGCGTCGTCGACGGCGCGCCAACAACGAGCTACCAGAAGAATCTGAGAAAAGAATATCTAAAACAATGATGCGTAGAAATGCCATGACGCTTCTCGAATATTCAACTGCTTGGGCCTTCCGTTGGTTTCAAAGCGCTTTTTTTTGTTCCTATTGCGATGCTAAATACGTTGATCCAGTACTTTTACGTAACCATGTTCAGACCTTTCACATTGCCGATGCTCCAACGAAACGAATTTTCTCAAAACTCACCGAAAACAACATggttaaaatagatattttaagctTACGTTGTAGGCTGTGTGATTTTGAAATAAGTAGTTTGGAATTaatgaaaaatcatttaatttctggacataaaaaaatatttcacctaAACTATAACGATGGTGTTTTACCATTCATTCTTCAACCTAATAGATTTGAATGCCAAATGTGTGATGCGGCATTCTCGAGTTTTTGTAAGATTAACGAACATATGAACactcattataaaaattatatttgtgataCATGTGGTAAAGCGTTTATTTCAAAATCAAGGTTCAGAACTCACGTCCAATCACATGAGATTGGTAATTTTCCTTGCGGAGAATGTGAAGAAATTTTGGAAACGAGAGCTGCCAGAATGTGCCATAGATTGAGAATACACAAAAAGGGAATACGGTACACATGTCCATATTGTCCAGAAGTATTTACTACTTATTACGCAAGAGCCAAACATTTAGTGGATGGACATAatcaacaaaagaaaaattatgagTGTTCATCTTGTGGAAAATTATTTGAAACTAGTTgcaCAGAAGCCACCGGAACAACAAAAAATTCAATAGCCATTGAGTGGAGAAAGAAACGCCCATTTTTAGAGAACAAGGCTAATTCGGCCGTAATACTAGATTGCTCAAATGCTATAGTATTTCGATGGTCGCGTGGTAAATTTCTTTGTGCCTACTGTCCAGAAATATTCCAAAACGTAGCAGAAATACGCAAGCATTGCGACATACATGAAAAGCTTACAGTACTTCAGAAACCAGAAGTACACAATTCATTCCCACTCAAAATAGATATAACGGATTTAAAGTGCACGctgtgtaataataatttcaaaaaatttaCGGATTTCAAAGTTCATTTAGTTAATGTCCACAGTAAAGTATTTGACTCAAACTACGACGACGGTGTTATTCCGTTCATACTTACGGGCTCGGAGTACAGATGTGTCATTTGTCACAACCTGTTTGAAAGCTACGTGAATTTGTTTAGTCATATGAATGAACATTATCAAAGTTTTGTATGCTACACGTGTGGTAAAGGGTACTCGGCAAAATATAAACTGCGAGCACATCAGAAAAGTCACGAGACCGGTAAAGTGCCATGTTCAAGATGTgacttagtatttttaaatcatgttATAAAAAACCGGCACGTGGCTACAGTGCATGGATCCAAGAAAAGATATCGTTGTCCAATTTGCGCTATGGCTTTCGAATCTTGCCATTCGAGATTGATACATCTTGGGAAAGTACATGGACAAAAAAGCGAATATCGATGTAAAATGTGCCCGGCAGTGTTTAATACTGGGACATCTCGTTATTCTCACATGAGACTTGTTCATAAGCAAAAAAAGATATGTTAG
- Protein Sequence
- MDSGRTDSGFLFLGECGQTENRKDKTSECLLSSDTKVIEKRRYQRSARAEARFITKKNATALLECWSLCPFRWKRNRFKCAYCEDNFTECSELREHVKICSIQHSVKDIYSKFKEMSLINVDITDATCRICAMSFEGILEMRNHVIDHGYDVDTTYPDGVLPFCLNKESWRCVICYQSFNNFLKLYEHMNIHYQHYICATCGKGYMTAPRLRKHSEVHITGTFPCDKCRRIFTMRAARDYHKAHAHAKGPRYECPQCNMRFGGYYERMNHLNEAHREKEVSYKCAHCELSFKTSGKRAIHVRSVHFPQQRNFACPFCKWLFKTGYELKRHMVRHTGERNFCCTICGKTFPRNRALRAHFKTHEDLSCKWCGVIFKQKTLLLTHLRSNHPEISSAIADYEELIVGVKRIRKLKENVCARQMRRRRRANNELPEESEKRISKTMMRRNAMTLLEYSTAWAFRWFQSAFFCSYCDAKYVDPVLLRNHVQTFHIADAPTKRIFSKLTENNMVKIDILSLRCRLCDFEISSLELMKNHLISGHKKIFHLNYNDGVLPFILQPNRFECQMCDAAFSSFCKINEHMNTHYKNYICDTCGKAFISKSRFRTHVQSHEIGNFPCGECEEILETRAARMCHRLRIHKKGIRYTCPYCPEVFTTYYARAKHLVDGHNQQKKNYECSSCGKLFETSCTEATGTTKNSIAIEWRKKRPFLENKANSAVILDCSNAIVFRWSRGKFLCAYCPEIFQNVAEIRKHCDIHEKLTVLQKPEVHNSFPLKIDITDLKCTLCNNNFKKFTDFKVHLVNVHSKVFDSNYDDGVIPFILTGSEYRCVICHNLFESYVNLFSHMNEHYQSFVCYTCGKGYSAKYKLRAHQKSHETGKVPCSRCDLVFLNHVIKNRHVATVHGSKKRYRCPICAMAFESCHSRLIHLGKVHGQKSEYRCKMCPAVFNTGTSRYSHMRLVHKQKKIC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00213791;
- 90% Identity
- -
- 80% Identity
- -