Hhim013939.1
Basic Information
- Insect
- Heliconius himera
- Gene Symbol
- -
- Assembly
- GCA_013421065.1
- Location
- JAATLT010008538.1:37129-50636[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.5e-11 1.6e-08 34.3 0.0 4 39 138 174 136 178 0.91 2 3 8.3e-12 9.3e-09 35.0 0.2 2 39 190 227 189 230 0.92 3 3 3.4e-10 3.8e-07 29.9 0.0 2 32 245 275 244 275 0.95
Sequence Information
- Coding Sequence
- aTGACTGGGACGGAAACATTCCGAGTGAAATGCGAGCCACTGTCCGATGAAGAAGATACAAGTTCACAGTTCAccaaaagttattttagtaAGCACGGGCTGGAGGAGCtggcgcccgcgcccgccggcCCCGCCGCCACGCCCGTGCGCGAGCAGCTGTGCGCGCCGCGGCACGCCGCGCTCGCCACGCTCGAGCCCGCGGCGGACCACCACGCGGGGTCTTCCCTTATTAGTAGACATATGGAAATGATGAATGAAGTGGCGGACTCGTCGGAGTTCGTACCGCTGATGATCAAAGACgagccgagttctgaaggcgAACAACCACATATAAGCAGTGATGACACAGACTCAAACGGACCAACACAAGAAACGTTCAGCCGATCGAGCCCAAAAAGCTGGACTCAACTAGACATGGAGAAAGCTCTGGAAGCTTTGAGAAAACATCACATGAGTTTGACTAAGgcATCAGCAACCTACGGTATCCCATCTACTACCCTGTGGCAAAGGGCGCACAGGCTCGGTATAGATACTCCCAAAAAGGAAGGGGCTTCGAAGTCGTGGAGCGAAGCGGACTTAAAAGGAGCTTTACACGCTTTACGAGCCGGTGCCATATCTGCTAATAAAGCTAGCAAGGCTTATGGCATCCCGTCCAGCACGCTGTACAAGATAGCGCGGCGCGAGGGCATCCGCCTGGCCGCGCCCTTCAACGCCGCGCCCACCGCCTGGCGCCGCGCCGACCTCGAGCGCGCGCTGCTCGCCATCCGCGCCGGCCACGTGTCCGTGCAGCGCGCCGCGCACCTCTACGGCATACCCACCGGTACGTGCT
- Protein Sequence
- MTGTETFRVKCEPLSDEEDTSSQFTKSYFSKHGLEELAPAPAGPAATPVREQLCAPRHAALATLEPAADHHAGSSLISRHMEMMNEVADSSEFVPLMIKDEPSSEGEQPHISSDDTDSNGPTQETFSRSSPKSWTQLDMEKALEALRKHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLKGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALLAIRAGHVSVQRAAHLYGIPTGTC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00212350;
- 90% Identity
- -
- 80% Identity
- -