Hcyd025998.1
Basic Information
- Insect
- Heliconius cydno
- Gene Symbol
- -
- Assembly
- GCA_036379175.1
- Location
- FAPN01076879.1:64-1986[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.4e-15 1.6e-11 44.8 0.3 1 42 21 63 21 64 0.92
Sequence Information
- Coding Sequence
- ATGTATTTTCAGATAGTCATGGTACGAAAATACGAAAGAATGAGTGGTCGCCAATCTTGGAGCGAAGAAGAAATGGCGAGGGCCGTGGCCGCCGTGGTGTCTGGCAAAATGGGCTACAAGCTCGCTGCTAGAACTTTTCACATACCACGGTCAACTCTCCAAAGACGTGCAAGCAAGGTGCGATATCAGCAACCAGATGAACCAAAGCCTTTGATGGGACACTATCGACGTGTATTCACAGAAAGTCAAGAGAAAGACCTGGTAGGTTATATTAAAAgcatggaaaaatattttatgggaGTTTCGAGAAGAGATATAAGAGAACTTGCTTTCCAATACGCAGAGGATAATAACCTGAATCATCCATTCGACGTCAATACTCGAATGGCTGGTGAAGATTGGGTGAGGAATTTTTTGAAACGTAACCCCGAATTGCTCCACAGGTCGGAAAAAGAATATGAACTGGAACCCGTTAATTTCGATCAGTTTTATCACTTCATGTGTCAATCAtcatga
- Protein Sequence
- MYFQIVMVRKYERMSGRQSWSEEEMARAVAAVVSGKMGYKLAARTFHIPRSTLQRRASKVRYQQPDEPKPLMGHYRRVFTESQEKDLVGYIKSMEKYFMGVSRRDIRELAFQYAEDNNLNHPFDVNTRMAGEDWVRNFLKRNPELLHRSEKEYELEPVNFDQFYHFMCQSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00786686;
- 90% Identity
- iTF_00457172;
- 80% Identity
- iTF_00777332; iTF_00780962; iTF_00781762; iTF_00778694; iTF_00782567; iTF_00777931; iTF_00779438; iTF_00775955; iTF_00780191;