Basic Information

Insect: Heliconius congener
Gene Symbol: -
Assembly: GCA_018230605.1
Location: DWAO01002444.1:3154-8228[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.04 1.5e+03 0.4 0.1 22 44 192 214 187 218 0.81

2 8 0.00069 26 6.1 0.9 21 48 219 246 208 253 0.84

3 8 0.028 1e+03 0.9 0.0 21 45 276 300 271 309 0.72

4 8 0.084 3.1e+03 -0.6 0.0 21 44 332 355 326 359 0.75

5 8 2.4e-06 0.09 13.9 0.1 21 52 360 391 339 392 0.83

6 8 0.0016 61 4.9 0.3 23 49 390 417 384 421 0.79

7 8 0.044 1.6e+03 0.3 0.1 16 45 409 437 405 440 0.77

8 8 0.0002 7.6 7.8 0.0 21 43 441 463 430 467 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.04	1.5e+03	0.4	0.1	22	44	192	214	187	218	0.81
2	8	0.00069	26	6.1	0.9	21	48	219	246	208	253	0.84
3	8	0.028	1e+03	0.9	0.0	21	45	276	300	271	309	0.72
4	8	0.084	3.1e+03	-0.6	0.0	21	44	332	355	326	359	0.75
5	8	2.4e-06	0.09	13.9	0.1	21	52	360	391	339	392	0.83
6	8	0.0016	61	4.9	0.3	23	49	390	417	384	421	0.79
7	8	0.044	1.6e+03	0.3	0.1	16	45	409	437	405	440	0.77
8	8	0.0002	7.6	7.8	0.0	21	43	441	463	430	467	0.91

Sequence Information

Coding Sequence: atggctgaaatattcaatttagacAATATATGCCGTTGCTGCCATTCTCAGGGgaactttaaacatttaaatgaatcttatttatacaatGGTCAGGAGGAAgtgtattcaaatatattacaacaaacatttaatatagaaattaaacCAGCTCCTGACTTATCTTATTCAATATGTGAATCGTGTATAGCAAGATTATGTGATGCATTTCAGTTCAGTCGACAAGTTTTATCTTgtgaaagattattttatgaatattgtagTACACAATTAAAAGatattgattttaattgcaAAGAAATCAAAGATGAAATCGAAGATGACgAGTTCataaaagaaattcaaaatcaaaaccAAAACAGTTTCGACCAAAAATATGATGATGgtTCATTTAGTGACATAGGAGATGATGATCAACCACTGTCTACGTTAAAAAGTAATTGCGATCAAAATGAATGGATAATACCAAATATAGTTACCCATTTTGAGGTTGAAAAGTTTAAGTGTGTTCATTGTGAAAAGGAATTTCAAAGGAAGAAAGGGTTGAAAGAGCATTTAAAAGTTCACACAGGGGAACGTAATTTTACTTGTGATATATGCAATAAGTCGTTTGGCCATAATCAGACCCTGAAAAGCCATATTCGTACCCACACTGGTGAACGACCGTATGTATGCGACATATGCGGCCGTAGATTCCCACAAAGGACACATTTGAAGCGCCACATCTTTATTATACACACTGGCGTTAAACCCCACGCGTGCAAAGTGTGTAATAAACAGTTTTCCAGCAAAAGTTATTTATCCATCCATGAGAGACAACACACGGGTGAGAAACCATACAATTGTAGCATATGCAAGAAAGATTTCACTGCATATACTACTCTAAAAGTGCATATGCGTGTACATACAGGCTTAAAACCGTATATATGCTCATTTTGCAACCGTCAATTCGCCCAAATGGCCAGTTTTAAGCTACACGAGCGTACTCACACTGGGGAACGCCCATTTTCTTGTAAAGTATGCAAAAAAGCGTTTTCTGACAATGGTTACTTGAAAATACACATGCGCGTTCACACGGGGGAGAAACCGTTCACTTGCGATATATGTAAACGTTCTTTTAGAGAAACTGGACAGTTGAAACGTCATATGCGTGTACACACGGGGGTGAAACCCTACACATGCAAGATATGCAACAAACAGATAGGGAATCTATCTAAGCATATGCGAGTCCACTCTCAGGACAGGCAGTTTAGTTGTGGCATATGCAACAAGCAGTTTTCCATAAATGGCAATTTGAAGTTGCACATGCGTGTGCACACGGGGGAGAAGCCGTTTGCATGTGATGTATGCGACAGCCATTTTAGTCAGAGCAGTGGTTTGAAAAGGCATAGATGTACTCATGAGAAAAttgaatag
Protein Sequence: MAEIFNLDNICRCCHSQGNFKHLNESYLYNGQEEVYSNILQQTFNIEIKPAPDLSYSICESCIARLCDAFQFSRQVLSCERLFYEYCSTQLKDIDFNCKEIKDEIEDDEFIKEIQNQNQNSFDQKYDDGSFSDIGDDDQPLSTLKSNCDQNEWIIPNIVTHFEVEKFKCVHCEKEFQRKKGLKEHLKVHTGERNFTCDICNKSFGHNQTLKSHIRTHTGERPYVCDICGRRFPQRTHLKRHIFIIHTGVKPHACKVCNKQFSSKSYLSIHERQHTGEKPYNCSICKKDFTAYTTLKVHMRVHTGLKPYICSFCNRQFAQMASFKLHERTHTGERPFSCKVCKKAFSDNGYLKIHMRVHTGEKPFTCDICKRSFRETGQLKRHMRVHTGVKPYTCKICNKQIGNLSKHMRVHSQDRQFSCGICNKQFSINGNLKLHMRVHTGEKPFACDVCDSHFSQSSGLKRHRCTHEKIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00621389;
90% Identity: -
80% Identity: -