Hcon005571.1
Basic Information
- Insect
- Heliconius congener
- Gene Symbol
- -
- Assembly
- GCA_018230605.1
- Location
- DWAO01003628.1:102-4870[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.044 4.9 8.8 1.0 1 21 79 99 79 100 0.95 2 23 7.5 8.4e+02 1.8 0.1 2 23 128 149 128 149 0.90 3 23 0.012 1.4 10.5 0.3 2 23 172 193 171 193 0.97 4 23 0.017 1.9 10.1 0.1 1 23 197 219 197 219 0.95 5 23 1.8 2.1e+02 3.7 0.7 1 15 224 238 224 247 0.78 6 23 0.048 5.4 8.7 0.2 1 23 253 276 253 276 0.94 7 23 0.00061 0.067 14.7 0.2 1 21 399 419 399 422 0.90 8 23 5.5 6.1e+02 2.2 2.0 1 13 429 441 429 443 0.89 9 23 3 3.4e+02 3.0 0.4 1 19 489 507 489 511 0.86 10 23 0.032 3.6 9.3 1.5 2 23 536 558 535 558 0.91 11 23 0.0068 0.75 11.4 1.6 1 23 580 602 580 602 0.98 12 23 7.9e-05 0.0088 17.5 1.1 1 23 606 628 606 628 0.98 13 23 0.2 23 6.7 1.1 1 23 662 685 662 685 0.92 14 23 0.0015 0.17 13.4 1.5 1 23 733 755 733 755 0.97 15 23 1.6 1.8e+02 3.9 0.2 2 23 779 801 778 801 0.89 16 23 0.9 1e+02 4.7 3.0 3 23 825 845 824 845 0.97 17 23 3.3e-05 0.0037 18.6 1.4 3 23 851 871 850 871 0.97 18 23 0.049 5.4 8.7 2.8 1 23 878 901 878 901 0.98 19 23 0.0003 0.033 15.6 2.8 1 23 907 930 907 930 0.97 20 23 0.0018 0.2 13.2 0.7 1 23 936 959 936 959 0.97 21 23 0.00054 0.06 14.8 0.5 1 23 965 987 965 987 0.97 22 23 5.4e-07 6e-05 24.3 1.0 1 23 993 1015 993 1015 0.99 23 23 7.2e-05 0.008 17.6 4.8 1 23 1021 1043 1021 1044 0.96
Sequence Information
- Coding Sequence
- ATGGACAGTGGAAGAACTGACTCaggttttctatttttaggaGAACGCGGTCAAACAGAAAACAGAAAGGATAAAACATCTTCTGAAACTTTACTATCTTGTGATACGAAAGTTATTGAAAAACGACGTTATCAGCGAAGTGCGAGAGCTGAAGCaagatttataacaaaaaagaacGCCACAGCCTTGCTCGAGTGTTGGTCGTTATGTCCATTTAGGTGGAAaagaaatagatttaaatgtgCTTATTGTGAAGATAACTTCACCGAATGCTCAGAGCTAAGAAACCATGTTAAAATATGCTCGATACAACACAGCGTCAAAGATATCTACAGTAAATTCAAAGAAATGTCACTGATAAACGTTGATATTACTGAGGCCACCTGTAGAATTTGTGCCATGTCATTTCAAAGTATTCTTGAAATGCGAAATCATGTTATTGATCACGGGTATGATGTAGATACTACATATCCTGATGGTGTTCTGCCGTTTTGTTTGAACAAGGAATCTTGGAGATGTGTAATATGTTATGAATCTTTTAACAACTTTCTCAAATTGTACGAACACATGAACATACATTATCAACATTACATATGCGCCACTTGCGGTAAAGGATACATGACGGCGCCGAGATTGCGCAAACATTCTGAAGTACATATAACTGGGACTTTTCCATGTGATAAGTGTCGACGAATTTTCACCATGCGTGCAGCTAGAGATTATCATAAAGCTCATGCTCATGCTAAGGGGCCTCGTTACGAATGTCCACAATGTAATATGAGGTTTGGAGGCTACTATGAAAGAATGAATCATTTGAATGAGGCTCATAGAGAAAAGGAAGTTTCTTACAAGTGTGCTCATTgtTCCGCTATTGCGGATTATGAAGAGTTAGTAGTAGGAGTTAAACGCAATAGAAAGTTAAAGGAGAACGTCTGTGCGAGGCAAATGCGTCGTCGACGGCGCGCCAACAACGAGCTACCAGAAGAATCTGAGAAAAGAATATCTAAAACAATGATGCGTAGAAATGCCATGACGCTTCTCGAATATTCAACTGCCTGGGCCTTCCGTTGGTTTAGAACTCACGTCCAATCACATGAGATTGGTAATTTTCCTTGCGGAGAATGTGAAGAAATTTTGGAAACGAGAGCTGCCAGAATGTGCCATAGATTAAGAATACACAAAAAAGGAGTACGGTACACATGTCCATATTGTCCAGAAGTATTTACTACTTATTACGCAAGAGCAAAACATTTAGTGGATGGACATAatcaagaaaagaaaaattatgagTGTTCATCTTgtggaaaattatttgaaactaGTTgcACAGAAGCCACCGgaacaacaaaaaattcaaTAGCGATTGAGTGGAGAAAGAAACGCCCATTTTTAGAGAACAAGGCTAATTCGGCCGTAATACTAGATTGCTCAAATGCTATAGTATTTCGATGGTCGCGTGGTAAATTTCTTTGTGCCTACTGTCCAGAAATATTCCAAAACGTAGCAGAAATACGCAAGCATTGCGATATACATGAAAAGCTTTCAGTACTACAGAAACCAGAAGTACACAATTCATTCCcactaaaaatagatataacagATTTAAAGTGCACGCTGTGTAATAATAGTTTCAAAAAATTTACGGATTTCAAAGTTCATTTAGTTAATGTTCACAGTAAAGTATTTGACTCAAACTACGACGACGGTGTTATTCCGTTCATACTTACGGGCTCGGAGTACAGATGTGTCATTTGTCACAACTTGTTTGAAAGTTACGTGAATTTATTTAGTCATATGAATGAGCATTATCAAAGTTTTGTATGCTACACGTGTGGTAAAGGATACTCGGCTAAATATAAACTGCGAGCACATCAGAAAAGTCACGAGACCGGTAAAGTGCCATGTTCAAGATGTgacttagtatttttaaatcatgttATAAAAAACCGGCACGTGGCTACAGTGCATGGATCTAAGAAAAGGTATCGTTGTCCAATTTGCGCTATGGCCTTCGAATCTTGTCATTCGAGATTGATACATCTTGGGAAAGTACATGGACAAAAAAGCGAATATCGATGGACATTcacaaagtttatatggaaacgTGGACGAAGGCTTTACAATGATCACAGAGATAACGCCGCAACTATTATACAATTCTCAAATGTTTGTCCTTTTCGCTGGAAACGCGGAGCTTTCGCTTGTTCTCATTGTCCGAGAACTTTTGGCAACTTTAAAGACGTTAGTAATCATATGCAGGAGCATCCTAATCGCCTTGAGGCAATGCGATATGCTCGTCCTTATGATAATGTAAAGGTGGAAATAAGTAACCTTCAATGTGGaatttgtaatgaaaatatgaatggcTTAGAACATCTTAAAGACCATTTGTTTGAAGGTCACCAAAAATCAATCACCAAAGACCTTAGTCTTGGTGTAAccccttttattttaaaagaaaaagaaatgctTTGTACTCATTGTGATGAACGTTTTCTCTTGTTTTCAAGACTGAACAGTCACATGAACCAACACTATCCAAATAATATCTGTCCTCACTGCGGTAAATCTTTCTCTGCCGCTCATCGCCTTAAGGCCCACCAGCTAATACATGAAACTAATAACCAAGAGCATAAATGTGCCAAATGTGGTGATATATTCGAGACGcgatctttaaaaaattatcacatGAACACTAAACATGCAACAGAAAATCGATACAGATGTCCCTATTGTAGAATATCGTTTAAGCGCTACTCAGATAGAGTTCGTCACCTAAAGCAGTTTCATAATCAAAGCGTAGATTATCCATGTCATTTATGTACAGCAGTTTTCGCTATGTCCGACCAAAGAACCAAACATATAAGAAACGttcatattaaacataaacaatttCAGTGTGATTTCTGCCCAAGTAAGTTTGTCACTGCCGGTCAGTTGAAGAGTCACTTAGTAAAACACAGTGGTGTCAAGGAATATCAATGCAACGTGTGCAAGAAGAGTTACGCGAGAGCTAGAACTTTGAAAGAACATATGAGAATACACAATAATGATAGAAGATTCGTTTGCGAATACTGTAATAATGCgtttattcaaaaatgtaGTCTTAAAAGTCATATTCGAACACATCACCCGAATGCGGAACCAGTGAAAATTTCagtatag
- Protein Sequence
- MDSGRTDSGFLFLGERGQTENRKDKTSSETLLSCDTKVIEKRRYQRSARAEARFITKKNATALLECWSLCPFRWKRNRFKCAYCEDNFTECSELRNHVKICSIQHSVKDIYSKFKEMSLINVDITEATCRICAMSFQSILEMRNHVIDHGYDVDTTYPDGVLPFCLNKESWRCVICYESFNNFLKLYEHMNIHYQHYICATCGKGYMTAPRLRKHSEVHITGTFPCDKCRRIFTMRAARDYHKAHAHAKGPRYECPQCNMRFGGYYERMNHLNEAHREKEVSYKCAHCSAIADYEELVVGVKRNRKLKENVCARQMRRRRRANNELPEESEKRISKTMMRRNAMTLLEYSTAWAFRWFRTHVQSHEIGNFPCGECEEILETRAARMCHRLRIHKKGVRYTCPYCPEVFTTYYARAKHLVDGHNQEKKNYECSSCGKLFETSCTEATGTTKNSIAIEWRKKRPFLENKANSAVILDCSNAIVFRWSRGKFLCAYCPEIFQNVAEIRKHCDIHEKLSVLQKPEVHNSFPLKIDITDLKCTLCNNSFKKFTDFKVHLVNVHSKVFDSNYDDGVIPFILTGSEYRCVICHNLFESYVNLFSHMNEHYQSFVCYTCGKGYSAKYKLRAHQKSHETGKVPCSRCDLVFLNHVIKNRHVATVHGSKKRYRCPICAMAFESCHSRLIHLGKVHGQKSEYRWTFTKFIWKRGRRLYNDHRDNAATIIQFSNVCPFRWKRGAFACSHCPRTFGNFKDVSNHMQEHPNRLEAMRYARPYDNVKVEISNLQCGICNENMNGLEHLKDHLFEGHQKSITKDLSLGVTPFILKEKEMLCTHCDERFLLFSRLNSHMNQHYPNNICPHCGKSFSAAHRLKAHQLIHETNNQEHKCAKCGDIFETRSLKNYHMNTKHATENRYRCPYCRISFKRYSDRVRHLKQFHNQSVDYPCHLCTAVFAMSDQRTKHIRNVHIKHKQFQCDFCPSKFVTAGQLKSHLVKHSGVKEYQCNVCKKSYARARTLKEHMRIHNNDRRFVCEYCNNAFIQKCSLKSHIRTHHPNAEPVKISV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00778916;
- 90% Identity
- iTF_00778916;
- 80% Identity
- -