Hcon005247.1
Basic Information
- Insect
- Heliconius congener
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_018230605.1
- Location
- DWAO01003326.1:1-2357[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-14 1.4e-10 42.0 2.7 201 265 31 95 17 121 0.76 2 2 3 3.7e+04 -6.0 15.8 6 161 122 174 115 191 0.46
Sequence Information
- Coding Sequence
- GAGGGGACGCTAGGTAGGTGTGTGTGTGGAGGCGTGCGGCCGCGGGACGCGCCCGACGCGCCGCCCGGCGACCGCTGCGGCAGTGTGCCGCCGCTGGCGCTCGTGTCGCACACGTCGGAGCAACTGCTCAACGACGCGGGCGAGGGGACGCTAGACGTGCGGCTCGAGCGTCTGGCAAGTGCTAAAGTTGAATTAGAAGGGGAAGTGCGGAAACTCAAGCTGCAACTAAACGACGAGCGTGCGGCGAGACAAAATGGCGTCGCGCATATGCACCGAGATGTTGATGGCGAGTTGGAAACCCTCCGTAAATCGGTATCAGAAGCAAAAGGTCGCGCGGCTCGAGCAGAAGCCGAGGCGGCCATACAAGCGGCGGCGGTCGCGCGTCTGGAGGCACAAGTCGCGCGGCTAAAGGCCAGGCAGGACCACCAAGATGAGCACGAGGAGATGCTCAAGCAGGAGAGGCGGAAGCTGCAGAGGGAGGCGAGAGAAGCACTAAACCGAGTGGAAGAACTAGAAACAGAAAACAGTCATCTAACAAAACGTCTTGACAAATTGAAGAACGCCAAGTCAGCTCTATTAAAGGACCTGTGA
- Protein Sequence
- EGTLGRCVCGGVRPRDAPDAPPGDRCGSVPPLALVSHTSEQLLNDAGEGTLDVRLERLASAKVELEGEVRKLKLQLNDERAARQNGVAHMHRDVDGELETLRKSVSEAKGRAARAEAEAAIQAAAVARLEAQVARLKARQDHQDEHEEMLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -