Hcha014182.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Heliconius charithonia
Gene Symbol
BCL11B
Assembly
GCA_030704555.1
Location
CM060824.1:3398274-3406622[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0015 0.12 13.4 2.8 1 23 126 148 126 148 0.99
2 13 0.00017 0.013 16.5 2.5 1 23 154 177 154 177 0.97
3 13 0.027 2.1 9.5 4.7 1 23 182 205 182 205 0.94
4 13 5.7e-06 0.00044 21.1 0.3 2 23 368 389 367 389 0.97
5 13 0.00059 0.046 14.7 2.1 1 23 395 417 395 417 0.98
6 13 0.099 7.7 7.7 0.2 1 23 512 534 512 534 0.98
7 13 0.0019 0.15 13.1 2.0 1 23 540 562 540 562 0.95
8 13 2e-05 0.0016 19.3 0.5 1 23 568 590 568 590 0.97
9 13 0.0003 0.023 15.7 3.0 1 23 599 621 599 621 0.99
10 13 0.0002 0.015 16.2 0.8 2 23 668 689 668 689 0.97
11 13 0.027 2.1 9.5 5.9 1 23 706 728 706 728 0.95
12 13 2.2e-06 0.00017 22.4 0.7 1 23 734 756 734 756 0.98
13 13 4.6e-07 3.5e-05 24.5 3.1 1 23 762 785 762 785 0.98

Sequence Information

Coding Sequence
ATGAACAGCAATGCCACAGAAGTTGATCCTTTAAGTTCACAATCacaatatagtttaaataatttccaCAATTTTGAGAGTTATGATAACTTGAATTACCCATATACAGTCAATGTAGAACAATATCAAAATGcttataattgttataataaaccCCAATCTAATATGAAAAACTCAcaagaaaatgcaaataatgaaaatagtgaaataaagaaaaatgatgTTAAAACTAcagataataaagatatatcAATACCAAATATTGATAATCAAagtttgaaagaaaataaaatagatactaaaacagataaaaaaaaagtcacagACAATACAAAAGCAACGGATAAGGGAAAAGATGATGaattacagaaaatatataaatgttttgcaTGTCAAAAGCAATTTACCCTAAGTTACTATTTGAAACTACATGTTAGATCACATACAGatgAAAAGCCCTACACATGTCCCAGCTGTGGACAATGCTTTATAACTGCGAGTAAATTAGGACGCCATAATAAAAGATTTCATTTAGAAATTAGATATCAATGTAGAATATGTTATAGGTACTTTTCTAGATTTGAATTCTTAACACGACATTTTGATAAAAAGCACCCGGATGATAAATTAGAAGGAGAACCATATGATTACAACGCCATACTGccatatttaaaagaattagAAGAACAAATGCGTgaaaagaaagagaaagagGCGGAACAAAAAACAGATGATATTTGGGCTGAAAATAATACTGCTAAAGGAGAAACATTTGATATACAAATAGAAGAAGTCAAAGTCGATATGAATATAGAAGTTAAAGAGGAGAATGATGCATATGACGATAGTGATGTCATTAATGAAGTATTCaatgatgataatgatgaaaATAAGGATGATATAAAAACAGATGTGGTTAAAGAGGAGGATGATGTAAAAGAGGAGGATGGTGTAAAAGAGGAGGATGATGTGAAAGAGGAGGGTGATATGAAAATGGAGGATGATATTCAATCAGACGACGACTACTTCCCATCGAACACGTGGGCCTCCACACCTAAAATCGAAACCCCACCTTCTCCACAACAAAAGCAGGACAAACTGAACTGCCCAGAATGTGGCAAGAGAGTGTCCACGGTCTCCTACATGAGGGTCCACATGAGAACGCACACTGGGGAGAGGCCCTTCAAGTGCTATATATGTAATGCAGGGTTCATTACTAGTAGCAAGATGCATAGACACGTGTTGACTCACCCTGAGTCGTGGGATGaagaTGGAATAAAACCGGAAAAGGAAGAAATAAAATCGGAAGTAGAAAAAGATGgcgacgatgatgatgatgatcccGATGATAAGAAACCgttaCAAAAAATGAAGGAAGCTCTAGCGAAGTTCTCCAAAAAACCAAAGAACAcggagaagaagaagaaaatgtaTCAAAAACGACCTCACGCCTGTGAATTTTGCCACAAACGATTCTTACATTTGGAAACTTTACAGGTACACAAAAACTGTCACGAGGGCgaagaaagaaaatacaaatgtaattttTGCCTCACCGAGTTAGAAAATGAAGCTGCACTTAAAACTCATGAAGCAACCCACGAGGGACCCAAACCGTACTTGTGCACCATATGCgggaaaaattataagaaacgcGAGACTAtgATATACCACAGAAAAAATCACAAGCCCGACAAAGAGTTCATATGTGACATATGCACAAAATCTTTCAACGCACAGAACAAATTGCAAAGGCACATAATATCACATAAAGTTGATAAATTCATACTTAGATACGAGTGTCCTGTGTGCGCGCACATGTTTAACACGAAATATCATGTGCAGATGCACTTGAACACTCACCAGAAGGAGGGGTTAATACAAGAGGAAAATCGAAACGAAATACTAGCGATGGTATTACAAAATGCACGTAAAATACCCAAAAAGTCAGATACATCGACCTCCCTAACCGAGATAGTGCCTTCTGACGAGCGAAGTCGCGTGTGCAACATATGTGGAGAAATGTTCCaacatttttactatttagAGGAACATTTAAAAAGCCACGGCTCCAAAATCGCCATAGAAGATAACGAAAAAatcgaagaaaaaaaacatatatgcaaaatttgtaataaaggcttcaaattacattattatcttAAATTACATAGTTTCACTCATACTAAAGAGAAACCGTTTATTTGTCAGCAATGTGGTAAGGGGTTCATAACCCGGGGGAAGTTAAAGAGACATTTGGAAACGCATACGGGGTTGAAGAAATATCAATGTCACATTTGTTATAAATTCTTCACAAGGCCCAGTTATTTGAGGATTCACGTTAGAACAATACATGGTACGCAAGATTATAATTTCAGGATGGATAAACGTTATGAGTTTACGGTTCCGTTGGCCAACGAATGA
Protein Sequence
MNSNATEVDPLSSQSQYSLNNFHNFESYDNLNYPYTVNVEQYQNAYNCYNKPQSNMKNSQENANNENSEIKKNDVKTTDNKDISIPNIDNQSLKENKIDTKTDKKKVTDNTKATDKGKDDELQKIYKCFACQKQFTLSYYLKLHVRSHTDEKPYTCPSCGQCFITASKLGRHNKRFHLEIRYQCRICYRYFSRFEFLTRHFDKKHPDDKLEGEPYDYNAILPYLKELEEQMREKKEKEAEQKTDDIWAENNTAKGETFDIQIEEVKVDMNIEVKEENDAYDDSDVINEVFNDDNDENKDDIKTDVVKEEDDVKEEDGVKEEDDVKEEGDMKMEDDIQSDDDYFPSNTWASTPKIETPPSPQQKQDKLNCPECGKRVSTVSYMRVHMRTHTGERPFKCYICNAGFITSSKMHRHVLTHPESWDEDGIKPEKEEIKSEVEKDGDDDDDDPDDKKPLQKMKEALAKFSKKPKNTEKKKKMYQKRPHACEFCHKRFLHLETLQVHKNCHEGEERKYKCNFCLTELENEAALKTHEATHEGPKPYLCTICGKNYKKRETMIYHRKNHKPDKEFICDICTKSFNAQNKLQRHIISHKVDKFILRYECPVCAHMFNTKYHVQMHLNTHQKEGLIQEENRNEILAMVLQNARKIPKKSDTSTSLTEIVPSDERSRVCNICGEMFQHFYYLEEHLKSHGSKIAIEDNEKIEEKKHICKICNKGFKLHYYLKLHSFTHTKEKPFICQQCGKGFITRGKLKRHLETHTGLKKYQCHICYKFFTRPSYLRIHVRTIHGTQDYNFRMDKRYEFTVPLANE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00621411;
90% Identity
-
80% Identity
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