Hcha021747.1
Basic Information
- Insect
- Heliconius charithonia
- Gene Symbol
- -
- Assembly
- GCA_030704555.1
- Location
- JALPMF010000042.1:148300-148731[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.5e-12 2.5e-09 37.3 0.1 1 39 9 47 9 52 0.95 2 3 6.6 1.1e+04 -3.2 0.2 19 26 107 114 107 114 0.79 3 3 3.4 5.5e+03 -2.3 0.0 34 45 117 128 116 128 0.79
Sequence Information
- Coding Sequence
- ATGCCTCCCAAGCGAGCATTGTGGTCTGAAGATAATCTGGAGGCAGCAGTCCGGGCAGTACAATGTGGCCGGATGAGTACGTACAAATCTGCCAAAAGGTACAAAGTGCCCAGAAGAACCATACGGAACCACCTCCAGACCGCCAGTTTAAAGAAAACCTTAGGCCGTAAACCTTTACTTAATGACGAACAGGAACCTGAGTTGGTGACTAGAATTGGGAGGTTTGCTGCAATAGGATTACCTGCTACACCACAGATTCTTCGCcggttagttttaaaatttttcgagAAGAATGACATCAAGCATCCTTTCAATCAACAAGCTAAAGCTGCTGGTAAGCATTGGTTTAGTAAGTTCTTGAAGAGACATCCGGAGATATCACGTAGAAAGGTTCAGTTTATGAACCCGGCCAGGGCTCAaaagctaaattaa
- Protein Sequence
- MPPKRALWSEDNLEAAVRAVQCGRMSTYKSAKRYKVPRRTIRNHLQTASLKKTLGRKPLLNDEQEPELVTRIGRFAAIGLPATPQILRRLVLKFFEKNDIKHPFNQQAKAAGKHWFSKFLKRHPEISRRKVQFMNPARAQKLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00042559;
- 90% Identity
- -
- 80% Identity
- -