Hcha021115.1
Basic Information
- Insect
- Heliconius charithonia
- Gene Symbol
- JARID2
- Assembly
- GCA_030704555.1
- Location
- CM060829.1:13899696-13912184[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-15 7e-12 46.1 0.0 9 88 349 424 343 425 0.84 2 2 1.1 2.8e+03 -0.7 0.0 25 39 462 492 431 520 0.61
Sequence Information
- Coding Sequence
- ATGCTTGATACAAAATCTGATATTTACATACAGGATGaagATTCTACTCCCAGCTGGAGGGCACCTACCACTACCAGCTTGGCACCATACTTGCATATACCAGATGGAGCTCAACCAGGGCCAAGCGGCACGCGTTCCAGTGCTCAGGGGTCCATTAATGATGGAGCTCAACCAGGGCCAAGCGGCACGCGTTCCAGTGCTCAGGGGTCCATTAATGATGGAGCTCAACCAGGGCCAAGCGGCACGCGTTCCAGTGCTCAGGGGTCCATTAATGATGGAGCTCAACCAGGGCCAAGCGGCACGCGTTCCAGCGCTCAGGGGTCCATTAATGataaTGCCCAACCAGGACCCAGCGGTCTACAATCGAGCTCCTACGCACAAAGTGAAATAgACTTGTGTCGAAGTGACCGTAGATCTTCCCTCAACTCCGAATCGTCGTATgatgGTGGGATGTACAGAGACGAAGAAGAACCGGGTTCTAGAAATAAGATGATACGAGTGTGGCTTGAAAATGGGGTATTTAAAATTCCGTCAGTGCCGAAATCTAGGGCGTCGCATTATTCGCTACATCCCAGCATGGAGGACGAGCGCCCGCGCAGACATTATTTCGGCGGTCGGCGTTCTAATACTCCCAGCATCCGACTGGGCTCGGAGCGTTCTAGCAGCCCCATGTCCAATATAACGTTGCTCGATAACGCCGAACCGGAGCAAATCATCGACGTTGACATCACCGAAATGTCTGTGCCCACCCGAAGGGATAGAATACAAATGTTGCCACTTAGACGCCATAGGGCGAGGTTCGAACGCGCCAAAATGGCTGATGCGCCCAGCTTCCATCCCACCGAGGAGGAATTTAAGGATCCCGTAAGTTACTTTGAGAAAATAATGCCATGTGCGGCGAAATATGGAATATGTAAGGTGGTCGCACCGCCTGGGTTCAAGCCCCAGTGCAACTTAAACGATGCGATGCGGTTCACAGTATTCAATCAATATATAACGAGAGTGTTCAGGCGATGGAGCTCTCTGACGAGGGAAATGTGTACCATGAGATCCCATCTGGCTACACTAAAGATTGCTTGCACACAACCGCCCTTGcttggcGGTATGGAAGTTAATTTGCCAAAACTATACCAATCTGTGAACAATAACGGCggcataaaaaatatgaacaagaAAACTTGGACCAAAGTGGCTGAGGAGCTCAACTGTGGGAAATTGTCTCATCCAGACAGGAGACTAGACCAGTTGTATATGAAGTACGTAGTGCCGTACACCTCTCTTAGCAAAAggGAGAGAAAAGAGATGATAAGAAGAGTCGAAGAACTGTGGCAAAAAAGGTATAGGAGGATGCTCGACAGGGCATCGAACCCGTTACACAGTCAAAAACACATGTTGGGAGAATCTGATTCATCTGATGATGACGAGGAATGTATCATTAAGGGTCGTCCTATGGATCTCCTTACCTTCAAAAGGatcGCAAATAACGTTCAAAAGAGATATTTGCCCAACCGCGTTACTATAGATGAAATAGAGAACTCTTACTGGTCATCTGCTCTCATGGCGGAGCACCACGTGTGCGTACACAGCGCTTCTATAGAAACAAGCAGCGAGGATTACGGCTTCACTAACAACGTGAATGAACCGTATGGCCAACATCCCTGGAATTTAAAGATGTTAAACCAAAACAATGGTAATATCCTCCGTTTACTTGGCTCTGTGGTCGGCTTGACCATCCCCACACTGCACCTGGGGATGCTCTACTCCACCAGCTGCTGGCACCGCGACCCCCATGGCTTACCATGGATGGAGTACATGCATGAGGGGCCTCCGAAAATATGGTATGGAATACCAGACGAAGAAAGCGAGAGATTCCGTAAGGCGGTGGAAATATTATGTCCTACGTCCTgtcaaaataaatctatttggCTCCCATCTGATATCACAATGATACCACCAAACTTTTTACTAGAACATTCCGTGTCATTGTCAAGGATGTTGCAAAAGCCAGGGGAATTTGTCATCGTATTTCCCAAAGCGTACTCCTGTTCTATAAGCACTGGGTTTACTGTGTCTGAGAGTGTCTATTTTGCTTATAACCACTGGATAAATAACATCGGTCAAGTCTTTCaaGAGCTACGTGACAGCTGCGAGCCGTCCATGTTTTCTCTCGAGCATCTGTTGATCTCAGCGGCGACGGACCCGCGCGCGTCCCTCAACGTACTACAACTGGTGCACGCCAGCATGTCCAACATAGTGGAGAGCGAGCTGTCTCACCGAGCGGCTCTCGTTAAACATGGCCTCAAGCCTCGCTTTGAAAAAAGGAACAACTCAACGGGCATTGTGTGGAATATTTCGGAGGAAGACGAGTGCGAAATATGTCGcgctaatttatatatatcgagGGTTAATGGAGTTTACGACAGAGATGGCGCTCTGTGCGTCGGCCATGCCCTACAGGTGCTAGAGGAGCGAGGACACAACATAAGGCGACGCAGCCAGTGCCACTTCGAACTGATCATTTACATGACGGAAGCAGAATTAAAACAGATTCTTGAGAGGATCACCAAAAGGCTTGTGGACGTGAGGATGGCGCAGGCTTTCCCCCGCGTCGTGTAA
- Protein Sequence
- MLDTKSDIYIQDEDSTPSWRAPTTTSLAPYLHIPDGAQPGPSGTRSSAQGSINDGAQPGPSGTRSSAQGSINDGAQPGPSGTRSSAQGSINDGAQPGPSGTRSSAQGSINDNAQPGPSGLQSSSYAQSEIDLCRSDRRSSLNSESSYDGGMYRDEEEPGSRNKMIRVWLENGVFKIPSVPKSRASHYSLHPSMEDERPRRHYFGGRRSNTPSIRLGSERSSSPMSNITLLDNAEPEQIIDVDITEMSVPTRRDRIQMLPLRRHRARFERAKMADAPSFHPTEEEFKDPVSYFEKIMPCAAKYGICKVVAPPGFKPQCNLNDAMRFTVFNQYITRVFRRWSSLTREMCTMRSHLATLKIACTQPPLLGGMEVNLPKLYQSVNNNGGIKNMNKKTWTKVAEELNCGKLSHPDRRLDQLYMKYVVPYTSLSKRERKEMIRRVEELWQKRYRRMLDRASNPLHSQKHMLGESDSSDDDEECIIKGRPMDLLTFKRIANNVQKRYLPNRVTIDEIENSYWSSALMAEHHVCVHSASIETSSEDYGFTNNVNEPYGQHPWNLKMLNQNNGNILRLLGSVVGLTIPTLHLGMLYSTSCWHRDPHGLPWMEYMHEGPPKIWYGIPDEESERFRKAVEILCPTSCQNKSIWLPSDITMIPPNFLLEHSVSLSRMLQKPGEFVIVFPKAYSCSISTGFTVSESVYFAYNHWINNIGQVFQELRDSCEPSMFSLEHLLISAATDPRASLNVLQLVHASMSNIVESELSHRAALVKHGLKPRFEKRNNSTGIVWNISEEDECEICRANLYISRVNGVYDRDGALCVGHALQVLEERGHNIRRRSQCHFELIIYMTEAELKQILERITKRLVDVRMAQAFPRVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00778578; iTF_00775842; iTF_00777789;
- 90% Identity
- -
- 80% Identity
- -