Hcha011979.1
Basic Information
- Insect
- Heliconius charithonia
- Gene Symbol
- retn
- Assembly
- GCA_030704555.1
- Location
- CM060821.1:4061049-4067210[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1e-17 1.3e-13 51.6 0.1 29 89 4 62 1 62 0.93 2 2 4.5 1.2e+04 -2.7 0.0 25 38 188 201 153 202 0.60
Sequence Information
- Coding Sequence
- ATGGCGAAGTCAGTATTGGACCTGTACGAGCTCTACAACCTGGTGATAGCCCGCGGGGGTCTCGTGGAGGTCATCAACAAGAAACTCTGGCAAGAGATCATCAAAGGCTTGCGACTTCCCTCCTCCATAACTTCAGCCGCATTCACTTTACGCACACAatacatgaaatatttatacgacTACGAGTGCGAGAAAAAGAACCTGTCGACTAGGAGCGAGCTGGACGCGGCTATCGAGGGCAATAAGCGGGAGGGACGTCGCGCCTCCGGACAGTACGACGCGCAGGCCGCCTTGGCCATGCCACCTTTAAACCGAGTGCCAGCGTCTCTCGCGCAGTTATCCCAGCACATGCAGCCGCTGTCGCTCTCGCTGGGGGGCGCGGTCGCGGGGGTGCCCCGTCTGCCGTCCCTGCCCCACGCCCCGCACATATCGCAGCACGACATCGAATACCGTGTCAGGGAATACATGAAGATGATACAGCAGCAACGGGATATGATTAGGAATGGGTCAGAATCTCCTCCAGGTGCTCCAATGGTGTCTCCAAGAGACGCGGCGTTGTCAGCCATCGACGTGTCACGACTTACTCTGTGGTCGCtctacaacaataataataacagccCACAACCCGATTTGGAACCACAacgCGAAGCCCTAAACCTGAGCGAGAGCCCCACGCTGCCGTCCAAGCGCGAGGCGTGCCGCTCCCCGCCGCCGCCGGCCAAGCGGCGCGCGCCCtccccgcccgcgcccgcgcccccgCGCGCGCCCTCCCCGCGCGTCAACGGGAGCGGGAACAACGGCATCGGCGCCGCGTTCAAGATTACTACGAGAGGCGACGCAAACACCGGCGACCAACAGCTCGTAGTCTCGATCGAACTGAACGGCGTCACGTATGAGGGCGTCCTCTTCCCCTCACAGAACGGCAACGGACAGAACGGCCATCGGCAAATGGTTtcttaa
- Protein Sequence
- MAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRVPASLAQLSQHMQPLSLSLGGAVAGVPRLPSLPHAPHISQHDIEYRVREYMKMIQQQRDMIRNGSESPPGAPMVSPRDAALSAIDVSRLTLWSLYNNNNNSPQPDLEPQREALNLSESPTLPSKREACRSPPPPAKRRAPSPPAPAPPRAPSPRVNGSGNNGIGAAFKITTRGDANTGDQQLVVSIELNGVTYEGVLFPSQNGNGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00457796;
- 90% Identity
- -
- 80% Identity
- -