Hros012183.1
Basic Information
- Insect
- Hedychridium roseum
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963989215.1
- Location
- OZ022316.1:4800061-4802240[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.9e-113 7.3e-109 363.7 44.0 1 300 29 322 29 322 0.94 2 3 0.003 56 2.9 2.6 121 171 321 371 319 374 0.91 3 3 0.042 8e+02 -0.9 5.4 195 238 354 396 342 397 0.58
Sequence Information
- Coding Sequence
- atggAGTCAGCAGTTACTGGACGCAGGCGAAATGTTACTAAGCACTCGGCAGAAGATCAAGCTCTTGATCAAATAGCCAAAGAGGCAGAAGCAAGATTAGCAGCTCGCAGACAAGCAAGAGCAGAGGCTAGGGAAATCAGGATGAGAGAGCTTGAAAGACAACaaaaagaagcagaagaaaatgCTGATAGAGTGTATGACATGTGTACAGATGCCAATAGAATGATGAGGGTAACGCCAGATCCTATTAGAACATCCCGTCTTCTTACAAACTCCAATAATTTTCAGTCAAGCCGCAGGTCTTCTGAAGATTCATTGGAGGATGCAGGTCTCAACAGAGATCTCAGATTAGAGCTTAAGGAACTTGAAGAGAAATTCAGGAAAGCAATGATAGCTAATGCTCAGTTAGATAATGAGAAATCCTCTTATTCTTATCaagttgatttattaaaagacaAGTTGGAAGAGCTAGAAGAGTCCGCTTCGCAATTACGCCGGGAActcaaggaaaaaaatcgagaAGCTGAGCAACTGAAACGTCTTAGTCAAAGGATGAAAGAAGATTTAGATATATGCAGAGCACAGCTTCAAGAAAGGGACACACTTATAGAAGAAAATGGGTTGGTTATAGTCGAAGATGAAGGAAGTGAAAATGAAGACAGTGAAGGTGAAAACAAGTCATGTCACAGAAGAAGGGTACTTGTCAGTACAGAAGCAGCAGAGTTATTGCAAAATGCTGGTGAAGGTTCACTAGATGTACGGCTAAGAAAGTTTGCATCGGAAAAAAAGGAGTTGCAGGATGAAATCCGGCATTTACGGTTGGAACTGGAAGAAGCGAGAAATCGTATGAGGTCTGAAAGGTCTTCAGGATCAGCATTAGatTCCGAGGACGTCCAACGAGAGGCCAACAAACAATTGGCCGACTACAAGTTTAAGTTACAAAAAGCAGAGCAAGACATGTCTACCTTACAGGCTACTGTAGCCAGGCTAGAGAGTCAAGTTATACGTTATAAATCCGCGGCGGAGGCTTCCGAGAAAGCAGAGGACGAATTGAAAgtcgagaaaagaaaattacagcGAGAAGTCAGAGAATCGCAGGGCCGCGTGGAGGAATTGGAGACAGCCAATTCTCATTTGCAGAGGCGATTggataaattgaaaaatgcaaaatcaGCCCTCTTAAAGGAACTCTGA
- Protein Sequence
- MESAVTGRRRNVTKHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCTDANRMMRVTPDPIRTSRLLTNSNNFQSSRRSSEDSLEDAGLNRDLRLELKELEEKFRKAMIANAQLDNEKSSYSYQVDLLKDKLEELEESASQLRRELKEKNREAEQLKRLSQRMKEDLDICRAQLQERDTLIEENGLVIVEDEGSENEDSEGENKSCHRRRVLVSTEAAELLQNAGEGSLDVRLRKFASEKKELQDEIRHLRLELEEARNRMRSERSSGSALDSEDVQREANKQLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- -
- 80% Identity
- -