Hsal030915.1
Basic Information
- Insect
- Hedya salicella
- Gene Symbol
- -
- Assembly
- GCA_905404275.1
- Location
- FR990109.1:23007696-23009072[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00022 3.5 9.2 0.0 21 51 169 199 163 200 0.89 2 7 0.0011 18 6.9 0.1 21 44 229 252 225 256 0.90 3 7 0.0095 1.5e+02 3.9 0.0 20 45 256 281 252 288 0.87 4 7 0.002 32 6.1 0.0 26 46 290 310 284 314 0.91 5 7 0.91 1.4e+04 -2.4 0.0 37 53 329 345 318 346 0.74 6 7 0.0043 68 5.0 0.1 18 48 363 393 350 397 0.88 7 7 1.5 2.4e+04 -3.1 0.1 5 16 445 456 442 456 0.79
Sequence Information
- Coding Sequence
- atggataaaaaaaattgtcggcTATGCTATAAAAATGAAGGCGCCTCGTATATATTTGGTGACGACAGTGGCACATCCATTTACTCGAAAATACTGTATTGTTGTGTTAATATTAAAGTTTCTGAGGGAGATGGACTGCCGACGCATATTTGTATCGCTTGCGAGGCCGAGCTTACAACTTCATACAACTTCGTGCTGAAATGCGAAGCCACTGACCAGATTCTACGCAGCCGGCCCACCGAAATCGATCGGAATGCCgaagatttaaaattaaaagtgaagGTAATAAAACAAGAAGCCGCCTGCGATGACGACCACTCTTATGAAGACGCTGATGAACCTTACCATTTTGTTGGTCTTGATGAAGTTAAGAAGGAGGTGAAGCCAAAACGGTcttataggaaaaaagcgtgtCTGAAAGGAAAAGGCTCATATAAGTGTAAGGAGTGCGGGCGAGTCTGTGCGAGCCAGTCGGCGCTCCTTATACACACCCGGGTGCACTCCGGTGAGAAACCATATTCATGCTCCTCCTGTGACAAGAAGTATGCAGACAGCGGTGGTCTCAAAAGACACACAGAATTACACCATTCGGGAAAGATGAGAGAAAGAAAATTCATGTGTGAAAACTGCGGCAAGGCATTTTATACTAAAAGTGATGTAGCTGTCCACTTACGCACACATACTGGAGAAACACCTTACGTCTGCACAATTTGTCCCTCGAAGTTCACCCAGAGCAGTGCTCTGGCGCGTCACAAGAAAACACATTCATCGGAGAAGTCCCATGGCTGCCCAACATGTGGCAAAATGTTTGGGACAAAAGAGAAACTCAAGCGCCACATCGCAACACACACAACTGTAAAACAGTACATGTGTCCTCTCTGTGGCtccctatttaaatataaaaacaatttaaagaaaCATTACAAATTGCATACTGAACCAAACCGTTTTGTGTGCAATTACTGTGGCCGTAAATTCAATCTCAAAGGCAAtcttaaaatacatataaagaGCCAGCATTCTGAGAAGTCTGGGTTCTGTACATTCTGTACTAAAAATGTGCCAAACTGGGACACTCATATGTGGCGTCATACTGGAGAAAGGCCTCTGAAATGTGAACTTTGTGAAAATAGCTTTTATGAATTGAAAGCTCTGGCCCACCATATGAACTTTAGGCATAATAACACAGACAAATATCAGTGTCCAATAGAAGGGTGTGGGATGACATTTCCTTCCCGACCCATGCTTGCTTTCCACAACGCCAAACTCCATGACACCAGAATTCCGTTCCCCTGTGACCGGTGTCCTAGAGGGTTCTACAGAAAGAACGATCTCGCAAGGCATAAAATAGGAACTCATAAGGAAAGACTGACATAA
- Protein Sequence
- MDKKNCRLCYKNEGASYIFGDDSGTSIYSKILYCCVNIKVSEGDGLPTHICIACEAELTTSYNFVLKCEATDQILRSRPTEIDRNAEDLKLKVKVIKQEAACDDDHSYEDADEPYHFVGLDEVKKEVKPKRSYRKKACLKGKGSYKCKECGRVCASQSALLIHTRVHSGEKPYSCSSCDKKYADSGGLKRHTELHHSGKMRERKFMCENCGKAFYTKSDVAVHLRTHTGETPYVCTICPSKFTQSSALARHKKTHSSEKSHGCPTCGKMFGTKEKLKRHIATHTTVKQYMCPLCGSLFKYKNNLKKHYKLHTEPNRFVCNYCGRKFNLKGNLKIHIKSQHSEKSGFCTFCTKNVPNWDTHMWRHTGERPLKCELCENSFYELKALAHHMNFRHNNTDKYQCPIEGCGMTFPSRPMLAFHNAKLHDTRIPFPCDRCPRGFYRKNDLARHKIGTHKERLT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00773104;
- 90% Identity
- iTF_00773104;
- 80% Identity
- iTF_00773104;