Hsal023793.1
Basic Information
- Insect
- Hedya salicella
- Gene Symbol
- -
- Assembly
- GCA_905404275.1
- Location
- FR990104.1:18850335-18861661[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0092 1 11.3 0.6 3 23 204 225 203 225 0.96 2 23 0.29 33 6.5 0.2 1 21 608 628 608 629 0.96 3 23 6.7 7.5e+02 2.3 0.3 1 22 671 692 671 694 0.82 4 23 0.0011 0.13 14.1 0.7 3 21 705 723 703 724 0.95 5 23 0.31 35 6.5 0.2 3 23 733 754 731 754 0.91 6 23 0.051 5.7 8.9 0.1 3 23 774 795 772 795 0.94 7 23 0.0036 0.41 12.6 0.4 1 23 801 824 801 824 0.92 8 23 0.12 14 7.7 0.0 1 23 850 873 850 873 0.90 9 23 0.019 2.1 10.3 3.4 1 23 878 900 878 900 0.97 10 23 0.019 2.2 10.3 0.3 1 23 906 929 906 929 0.95 11 23 0.001 0.12 14.3 1.3 1 23 942 964 942 964 0.98 12 23 0.0014 0.16 13.8 4.0 1 23 1013 1036 1013 1036 0.96 13 23 0.0067 0.76 11.7 1.8 1 23 1106 1129 1106 1129 0.96 14 23 0.0011 0.12 14.2 2.1 2 23 1155 1177 1154 1177 0.95 15 23 0.086 9.7 8.2 0.1 2 23 1183 1205 1182 1205 0.93 16 23 0.0098 1.1 11.2 0.2 1 21 1249 1269 1249 1270 0.95 17 23 0.0012 0.14 14.0 0.6 1 23 1280 1302 1280 1302 0.93 18 23 0.00011 0.012 17.3 0.3 2 23 1394 1416 1394 1416 0.93 19 23 3.3e-07 3.7e-05 25.3 1.4 3 23 1423 1443 1422 1443 0.98 20 23 0.006 0.67 11.9 1.7 3 23 1465 1485 1463 1486 0.95 21 23 0.18 21 7.2 0.0 1 23 1507 1529 1507 1529 0.97 22 23 0.027 3.1 9.8 0.6 1 23 1535 1558 1535 1558 0.95 23 23 0.00031 0.035 15.9 0.7 1 23 1566 1589 1566 1589 0.96
Sequence Information
- Coding Sequence
- aTGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGGGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGGTGACTCGGAGCTTCACGTCCTCGCATCGAAAATCAAGGATTGCGTGGCTATTCAAATAAACGAGAACGATGACCTGCCAACGAATGCCTGCAGGAAATGCGTGGACAACGTCAATAACTGGCATATATTTAAGACAGTTTGTGAAAGGACCCAAAACAAACTACAGTCTCTGATTAAAAAAGATGGCAGCCAACTAGAAGAGGTGAACATAAAAAGTGAACCATTGTCTGATGAGGCCTATGATGATGGAGTGGTTATTGATGGAGGTTATAATGAGGTCGCTGGAAGCAGCAAAACACAACTCGAGGGCCCACCAATCTTGGCTTCATTGGGGCTCACACCAAGGAGTGATAAGGGTATTGAGAGCGAAAAAGACGAGGAAGAAGAGGAAGATGAAGAAATGATGGATGCTCAGCAGTATACCAAAGTGCCCAACATGCCTGAAGTGTCCATCACAGTGATGCGTCCCACCGGCGAGACCCTGCACGCTCGTCAAGGCATCCAACAGCTGGCATCCAAGGATTGTCTCGTCTGCGGCCGTGCCTACAGGTACTCTCACAATGCCCGGCGACACGAGCTCACCGCTCACAGCTTTGACCGATACACAAATAAGATAAACACTGTTAAAAAACCAAAATCACACATGCAACCAAAACTCAGACTCAACCCGTTCAACCCGAAAGCGCGCCTAATGCCTAACTCTATCAATCACAAGCAATTCCAAAAACCAATGCCATCTAGGATTATGCCGTCACGGGTCGTCGCGCCTCCGAAACCGATACCAATCAAAAACGCTAAACCTGTTCAAAACAACTTACCATATCCTTTGCGCATAAAAGCACTAAaggatttacaaataaaaaagaaagaacCACAAATCTTAAAGACTTTGCTCACCTCTAAACCCGAGCTGCTGGTCTCTGAGCCCGAAATTATAAACTCGGGACCAGAAAGCCCAGAAACGTTAATATCGGAACCTGAAATAGCATCATTCCAGGTTGAAACTATTTTGTCCGAACCCTGTTATGACCAAAACCAGGATGAAGAAGAGGGAGATGAATCACAGAATCAAAACCAGCATTATGATACTGTGGACATGGAATCTGATAATGAAATCGAAATTGCCCGCCAACAAGAGAATGACGGCGAGTTGGATGACAACCAGGAGGAACAAGACGGCGATGACATTTTACAAAATGACAATGAACATACAGAAGGAATGGAAGGTGAGATGACTGACAACGAGAATGGACAGCAAGATGACGATGATGAACATGGTGACAACCAGGGCGATATTACAATAGATGAACATAATGATATTCAAGGCGAAGATGCAGAGAGGGATAACGGCGAGGATAATGGGGAGAGAGAGGATGATCAAGAAGAAGGTAACGATGCTGATGACAATGAAAACGAAGAAGATCTTCCTCCAGAATTAGCACCGGTTGTTGAAATCAATGAAGATATGCAAACTAATTCTTACAATAGCGAACAGAATGAAGACGAAGAAGAGGAGCTTGACGAATCGGCGGCCAATGAAACAATGGATGAAGATGTCAAGGAACTCGATCCTGACAAGATTTACGTCACTAAAACTCAGAGAGATTTTATTAACAAGTACAGAGATATTATTCAACAGATCAATACTAAGCGATGCCTTTGCTGCGATAGGGAACATCCTCGCAGAAAAGCTGTAATCCAGCATCTGCAGAAAAATGGTCACAAAGTCCCGAAGCATACATGTTACAATTGCGTCATAACTTTTGGACATATCGGGGCATTGCTCAGTCACATGAGAGCTAATGTTTGCACAGACTTGTGGAAGGTGATCTACAATGAACAAGGAATCACTGACGACCTGGTCATTGAAGACGGGCGTAAAGATAATAAGGTGCAATACAAGGATATTTTCAATGCTAGATCGTATGCATGTAAACTGTGTCCGGCTAAATTCCAACTTAAACAATTTATTATGAAACACGTTCTGGATGTTCATGAGGATGGTCAATCCAGGGTCCAGATGGCCTGTGTACACTGCGGGTCTAGATTCAAGGATAAGTCCCTGTGGAAGAGACATATTCGGAACGGAGAATGTACAGTTTACATTGCATGCGATTTATGCCCTGAGAAATTCGTGAATATGCAAGACTTCAACGACCACGCTTTACATGTGCACGCTGGAAGTTTCGATCCTGACAATCAGAGCAAATGCATTGACGGCCGCCCCACAGATTGTCCTATTTGCGCAAAGAAGCTCTCCAATTATCCTCTCTTGGTGAAACATTTGAAGGCTATACATAACGAGGATAAGCCTCACTACTGTCAAAATTGTGATGCAAAATTCGAGCAAGCTCCTGATCTGAATAAGCATATTTACGCCGAACATTCCGACAAAGTCTTAGGAGCGCAATCTATAGAACCGGACATGTCCCTTGTTAAGGAAGAAGCTGAGGAATACCATTACTCGTGCACAGAATGTAACGCCATATTTGAAACTGTAGACGCGTGGACAGACCACCAAGTTGCAGAGCACAATCAAGTCGCCCATCACTGCGACCAATGTGAAAAGAAGTTCTTGCGCCCGTCCGAGTTAGCGGAACATAAAAATACGCACTTAAGGGTTAAATTTTATCCTTGCAGTGTTTGCTCGAATTCTTACAGTACTCCTCAAAAACTATCCGAGCACGTACAGCAGACGCACCCCGGCGCTTCGGCGTTGGCCGCTGTAGATTCCGAGTTCTATTGTGATATTTGCATCAGATCCTTCAAAAGTCGTCAGGCTTATTCTAACCATATGCGTATCCATGCTAAAGTTCCTACAACTAATAGAAAACCGGGTGAACCTAAAGGGTTCGCTCCACAAATTATCGGGAAACCTATCCGTCAGTTCCCGATGGTCCAACCAGGGTTCGTATCATTCAAACCGAATTGTAATGTTCCTAACGCCCCTTACTGTTGTGACATATGCGGAAAGGGCTTCATGCACAAGAAAAACATTTGGAAACATAAGAAAGTCTTACATGCCGACCTCCTTAATGAGAGGAATGACAGTGAAGAAAACACAATGCAAGCGTCCACTGAAGAAGATGAATATAATGTCGATGAAAACGGCATCGCGTTAACTACACCACAATTCAATAGTTTCAACTTTTCTAACTTTGCCAATAATGTCCAACAGCAACCACAGCAGCAGCAACAAGCACAAGCAGGACAAGCGGCTGACTTGCCTTTCTCATGTGAACTTTGCTTTAAACGGTTCCCGTTAAGAACGAGTCTATGGAAGCATAAACGCGCCAAACATGGCATCATTAATGCGAGCGCGTCTGGCAATCCCGAGAATCAGGCGCCGCAACCATCTTCGGAAGGTGGTAGATCTAGTTGCACGATTTGCAAGATAACATTCTCGGATAAAAAGTCGTACTATCGCCATAGAAAGAACGTGCAcaaatccacagcacaaatgTGCAAAATTTGTGGGAAACCTCTGAACTCTACTTTGGAGTTGTATGAACACTTGAAGGCTGCCCACGCTCGTGAATTATTAGGATATAATGCTAACCAAGGCACAAGTAAAGCACAAGATATATCTCAAGAGGCGGAAATAGAATACGAGGCCGAACCCGAAATCGCCGATCCCAGCGCGGAGTATCAAGCTCGATATCCATGTGATACGTGTGGAAAACAATTTGTAGGGCTGCTCGCTTTACAAAACCACCAGTGTATAAATCAAACTGTTTCAGAACCGCAAACATTCGACTGCGAGATTTGTCACAAGAGCTACACATCAATAGCCGCGTTGAAGAGTCATCGTGGGTGGCATTTACGCTCGCCTGACGGCAAGGCCGCCGCAAACAATAGTGGTCTGTGGATGCCTCAACACAAGGTCACTAGCAAAGTGAGTAAGCACGAGGTCGTAGATCCATCCCAGCTCGCAAGGGTGACTCATTCGACCCCCACCGCTACTACCACGACTAAACGAAGACTGCCGCCTGAAGTCGAAGTGACCGTCGTGAATCCTAACAAAAAATTGAGGTCTGACGATTCCATGGAGCTCGACCAGCAGAATAGTTTGCCCGGCACCTTGGAAGATCGTTACTGTACTATCTGCGACAAAGAATTTACTAAACGCGCGGCATATCAGCGCCATATGGACGAAGTGCACCAGCCTAACTCTGTGTTCTGTCCAGTGTGCGACAAGAGCTTCACACGGAAGTCTACGCTGCTagtgcatatgaagaagcattACGGTGGCGATGGCGAAGGTAGTTCTAGCGCCATGGGTCAGGGGGAAGATGATATGTTTGGTTGTGACGTGTGCGGTACGCAGTTTAATAGCGAGAACGCGTTACGGACGCATCGAACGCGTCATCATGGAGAGGAAGAGGAGGAATCTGACGATGATGGTAATGTGCCATTGGCGCAACCCGGCGAGTTCACTTGTGCTCAATGCGGCGACGGCGTGGCTACGCCGCGCGACCTTATTGCCCACCGAACCATGCACGCAACTCCAACCAAATTCTTCTGCAACATTTGCAAAGTTTATTTCGCGAGGGCCTTGGACCTATCTTCCCATACTCGTGCCAGGCACTCCGACAACGAAAAGGTATTCTTCCCTTGTGCCATGTGCGACCGTTTTTACATGAACAAGAAGAGTTTACAACGACACATCGAGATGTCTCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSGDSELHVLASKIKDCVAIQINENDDLPTNACRKCVDNVNNWHIFKTVCERTQNKLQSLIKKDGSQLEEVNIKSEPLSDEAYDDGVVIDGGYNEVAGSSKTQLEGPPILASLGLTPRSDKGIESEKDEEEEEDEEMMDAQQYTKVPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRAYRYSHNARRHELTAHSFDRYTNKINTVKKPKSHMQPKLRLNPFNPKARLMPNSINHKQFQKPMPSRIMPSRVVAPPKPIPIKNAKPVQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPELLVSEPEIINSGPESPETLISEPEIASFQVETILSEPCYDQNQDEEEGDESQNQNQHYDTVDMESDNEIEIARQQENDGELDDNQEEQDGDDILQNDNEHTEGMEGEMTDNENGQQDDDDEHGDNQGDITIDEHNDIQGEDAERDNGEDNGEREDDQEEGNDADDNENEEDLPPELAPVVEINEDMQTNSYNSEQNEDEEEELDESAANETMDEDVKELDPDKIYVTKTQRDFINKYRDIIQQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRANVCTDLWKVIYNEQGITDDLVIEDGRKDNKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVQMACVHCGSRFKDKSLWKRHIRNGECTVYIACDLCPEKFVNMQDFNDHALHVHAGSFDPDNQSKCIDGRPTDCPICAKKLSNYPLLVKHLKAIHNEDKPHYCQNCDAKFEQAPDLNKHIYAEHSDKVLGAQSIEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQQTHPGASALAAVDSEFYCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEPKGFAPQIIGKPIRQFPMVQPGFVSFKPNCNVPNAPYCCDICGKGFMHKKNIWKHKKVLHADLLNERNDSEENTMQASTEEDEYNVDENGIALTTPQFNSFNFSNFANNVQQQPQQQQQAQAGQAADLPFSCELCFKRFPLRTSLWKHKRAKHGIINASASGNPENQAPQPSSEGGRSSCTICKITFSDKKSYYRHRKNVHKSTAQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGTSKAQDISQEAEIEYEAEPEIADPSAEYQARYPCDTCGKQFVGLLALQNHQCINQTVSEPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDPSQLARVTHSTPTATTTTKRRLPPEVEVTVVNPNKKLRSDDSMELDQQNSLPGTLEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYGGDGEGSSSAMGQGEDDMFGCDVCGTQFNSENALRTHRTRHHGEEEEESDDDGNVPLAQPGEFTCAQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMSH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00010410;
- 90% Identity
- iTF_00680834;
- 80% Identity
- -