Hsal031598.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hedya salicella
Gene Symbol
-
Assembly
GCA_905404275.1
Location
FR990110.1:10786967-10802247[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00013 0.015 17.1 0.1 3 23 129 149 128 149 0.97
2 19 1.2e-06 0.00014 23.5 1.2 1 23 155 177 155 177 0.99
3 19 7.6e-06 0.00085 21.0 2.7 1 23 183 205 183 205 0.99
4 19 8.2e-07 9.2e-05 24.0 1.4 1 23 220 242 220 242 0.98
5 19 0.00015 0.017 16.9 0.7 1 23 257 279 257 279 0.98
6 19 6.9e-05 0.0078 18.0 3.1 1 23 294 316 294 316 0.98
7 19 4.8e-07 5.4e-05 24.8 1.5 1 23 331 353 331 353 0.99
8 19 0.00021 0.024 16.4 2.8 1 23 359 381 359 381 0.98
9 19 8.2e-05 0.0092 17.7 0.0 1 23 431 453 431 453 0.99
10 19 1.5e-05 0.0017 20.0 2.1 1 23 459 481 459 481 0.99
11 19 0.049 5.5 9.0 1.8 1 23 488 510 488 510 0.98
12 19 8.2e-07 9.2e-05 24.0 2.3 1 23 516 538 516 538 0.99
13 19 0.056 6.3 8.8 1.8 1 23 545 567 545 567 0.98
14 19 3.3e-06 0.00037 22.1 1.5 1 23 573 595 573 595 0.99
15 19 0.00063 0.071 14.9 0.7 1 23 602 624 602 624 0.99
16 19 3.7e-06 0.00041 22.0 1.9 1 23 630 652 630 652 0.98
17 19 0.0027 0.3 13.0 0.3 1 20 658 677 658 680 0.93
18 19 5.2e-05 0.0058 18.4 1.4 2 23 687 708 686 708 0.96
19 19 4.8e-06 0.00053 21.6 1.4 1 23 714 737 714 737 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAGATCAAAGCTGAACCCATGAGTTTCTACTCATCCCACGCCCACGTCCACCCCGGCCCCCCCACGATAGTCCGCTCCGACTCGAACCATGCCATCATCAACATGAACCAGCACCACCCGGAAGACTCCAAGGACAGCCTCATAGTGCAGCAGCAAGTGCAGCATCAGCAGGATCTGATGGACCAGCATCAACAACAGGACTTGCAACAGGATGATGAGTTAAGCTTTAAAGGAATGGATGATGAAGGTGTCGAAATGGATATGGATGGCCGTCAATGCTCTCAGGGTTTGGGCGTCGATATGGGTTCAGTTCAAACAAAAATGGAAGTATCAAATGGAGGGCAATCAACACCACGATCAAAACCACAAGCCTGTAAGGTTTGCGGTAAAGTACTCTCGTCCGCTTCGTCTTATTACGTCCATATGAAGCTTCATTCCGGAAACAAACCTTTTCAGTGCACGGTTTGCGACGCAGCGTTCTGCCGCAAGCCGTACTTAGAGGTGCACATGCGCACGCATACTGGCGAGCGGCCCTTTCAGTGCGACCTGTGTCTCAAGCGCTTCACGCAGAAGTCCAGTCTCAATACGCACAAGCGCGTCCACACCGATGAGCACATGCGCGCCTTGATGGTGAAGGAGCGGCCCTACAAGTGTGAGCTCTGTGGCGTCAGGTTCACGCAGAGCTCCAGCCTCAACCGCCACAAGAAAATACACACGGAGGAACACAGACGCGCGCTGCAGGCCAAGGAACGGCCCTACCAGTGCGGCGTCTGCTATCTGAGATTCACGCAGAAATCGAGTTTGGGCCGGCACGGAAAGATACATACTGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACATGGGAAAATACATACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCGTATCAGTGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTGGGCACTCATAAACGTATACACACTGGAGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGGTACCGAATCCAAAAAGGGGTCAAAATTGGGGTTGTGTCGGCGCATTCGCGACGCGACTATTCGGCCGGGATCGGAGCGCCAGCGTCGGCGACGTGCGTTACTCGCTTTTGTGTGTGCACTGGGCGCAGTGCAAGGGCGTCCTTACACGTGCGGGCTTTGCCCGGCGGCCTTCGCCCGCCGCCCCTACCTGGACATTCACATGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGCGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACGTGCAAGCAGTACCTGGAGATTCACACGCGCACGCACACCGGCGAGCGGCCCTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAATCCAGCCTCAACATCCACAAGCGGACGCACTCAGTCCAAGGCCGGCCCTTCCAGTGCCTGCAGTGCCCCGCCGCCTTCACCTGCAAGCAGTATCTGGAGATCCACAACCGCACGCACACGGGCGAGCGGCCCTACCAGTGCGATGTCTGCCTCAAGCGATTCGCGCAAAAGTCCACACTCAACATACACAAACGAACGCACACAGTGCAAGGTCGGCCGTACCAATGCATGGAGTGTCCGGCCGCGTTCACTTGCAAGCCGTACTTGGAGATTCACATGCGGACTCACACCGGGGAGAGACCTTTTGAGTGCGATGTCTGTTACAAGCGCTTCACGCAGAAATCGACGCTCAACATTCACAAGCGAATTCACACCGgaGAACGGCCATATGCTTGTGACATATGTCAGAAACGATTTGCCGTCAAGAGCTATGTAACAGCGCACAGGTGGTCGCACGTGGCCGACAAACCTCTAAACTGCGACCGCTGCTCGATGACTTTCACATCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACTCGGCCGGCTCCTGCTACGAATGCAGCGTCTGCGGTCGCACGTTTGTCCGCGACAGCTATTTAATACGGCATCACAATCGCGTGCACCGCGAGAACCACAGCAACGTGTCGGCGAACAGCATCGGAACCATGAACAGCGGCGCGACCAACACCAACAACTCCAACAATAGCAACTTTGATTCGCCCGGCGTTTGTGACTTAAGCTTTGTTCCTATGGTGAATCGTTACATGACTTCGCAAGGGACACAGGTCTCCATGCAAGATACAAGCAAGATGTCTGCTATGTCGCCGCAATCTATCGCGTCGATATCTTCGCCGCCTCCGCCGCACACACCCACTCCGCAACCCCAAATGTCGGGTCAGATGCATCTGACCGATTGA
Protein Sequence
MFEQQIKAEPMSFYSSHAHVHPGPPTIVRSDSNHAIINMNQHHPEDSKDSLIVQQQVQHQQDLMDQHQQQDLQQDDELSFKGMDDEGVEMDMDGRQCSQGLGVDMGSVQTKMEVSNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKERPYKCELCGVRFTQSSSLNRHKKIHTEEHRRALQAKERPYQCGVCYLRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGTESKKGSKLGLCRRIRDATIRPGSERQRRRRALLAFVCALGAVQGRPYTCGLCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSAGSCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTMNSGATNTNNSNNSNFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSAMSPQSIASISSPPPPHTPTPQPQMSGQMHLTD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_00022996;
80% Identity
-