Hsal025703.1
Basic Information
- Insect
- Hedya salicella
- Gene Symbol
- -
- Assembly
- GCA_905404275.1
- Location
- FR990106.1:2342744-2358367[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.1e-11 6.8e-08 33.5 0.0 4 39 236 272 233 276 0.89 2 4 3.8e-11 6.2e-08 33.6 0.1 2 39 288 325 287 328 0.92 3 4 2.7e-14 4.5e-11 43.6 0.0 2 45 343 387 342 387 0.96 4 4 2.6e-18 4.2e-15 56.5 0.0 1 43 394 437 394 439 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCGCGGTCTCCCGCAGGTCAAGCGTGAGCCGGCCTCCGACGACGACAGCGACTCCCAGTTCGCACACGGCTTCCTCTGCAATCAGATACCATCGCTGGAGCTACGGCCAGTGAAGCTCGAGGCCATAGACGACAATGCGTCTGCGCATATCCTGTGTCACCTGCAGGGTTCAGAAGGCCTGGAGGAATTGGCGCCACCGGCGCCTGCGGGCCCCGCCGCGACCCCGGTCAGCGTCAAACAGGAGCCCGCCGAGCCCGCCGTCACGCTGGAGACGCTCGCACCCGCGCCGCACTCCGACACGCTGCATCAGCAGCCCCCCGGCACGCTGGAGGCGCTTGGACCCGTGCCGCTCTTCGACACGCTGGTACGTTTACTGAAGGGCAGTGACCTCTCCTGGGTCTGTGTGATGCTACGTCAAGTTTCGCCACTGCACGCTCAGCATCAGCAGCCCACCGGCACGCTGGAGGCGCTCCAACCCGCGCCGCTCTTCGACAAGCTGGGTTCCATGCTCATCGACAGACACAAGACGCTGCCAGGCGCGAACGATGCTGACACCATGGACTTCATGCCACTCCTCGCTGTTAAAGACGAGCCTTTGTCAGAAGGAGAACAACACCACCTAAGTGGATCAGACACTAGTGACTCCAGCACCCATCCTGAGCCGCCCCGCGGAAGCCCTAAGAACTGGACGCAGCAAGACATGGAACTGGCCCTGGAGGCGCTTCGGACACACAACATGAGCCTCACTAAGGCGTCAGCAACGTATGGTATCCCGTCGACAACGCTATGGCAGCGCGCGCACCGCCTGGGCATCGACACGCCCAAAAAGGAAGGAGCCTCGAAGTCCTGGAGCGAGGCCGATCTGCGCGGAGCTTTGCATGCCTTGAGATCCGGAGTCATATCGGCTAATAAGGCGAGCAAGGCTTATGGCATCCCCAGCAGCACGCTGTACAAGATAGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCCTTCAACGCCGCGCCCACTTCCTGGCGCCGCGCCGACCTGGAGCGCGCGCTCGCCTCCATCCGCTGCGGCGCCTCGTCCGTGCAGCGCGCAGCCTCGCAGTTCGGCATACCCACAGGCACACTCTATGGACGGTGTAAGCGAGAAGGCATCGAGCTATCTCGGTCCAACCCGACGCCTTGGTCGGAAGACGCCATGGGAGAAGCTCTCGAAGCTGTCAGgGTGGGTCAAATGTCAATAAACCAAGCAGCGATTCACTATAATCTGCCTTATTCATCGCTGTACGGGCGATTCAAGAGATGCAAATATCAGAGTCCTCAAGCGATGCCCCAACAGCCCATGCCAGAGAATATGGAGATGGACGCCCAAGCCCAGATGTACTATCAGCACCAGATGCCAGCCATGCCCGAGGACCCTTACCACCAGAGCTACCTGCCCGCGGACCCGGGGGACATGCATGCCAGCATGCTGCACGACCAGGGCTATGGGATGTACTACCAAGGTATGTGA
- Protein Sequence
- MPGRGLPQVKREPASDDDSDSQFAHGFLCNQIPSLELRPVKLEAIDDNASAHILCHLQGSEGLEELAPPAPAGPAATPVSVKQEPAEPAVTLETLAPAPHSDTLHQQPPGTLEALGPVPLFDTLVRLLKGSDLSWVCVMLRQVSPLHAQHQQPTGTLEALQPAPLFDKLGSMLIDRHKTLPGANDADTMDFMPLLAVKDEPLSEGEQHHLSGSDTSDSSTHPEPPRGSPKNWTQQDMELALEALRTHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRSGVISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWRRADLERALASIRCGASSVQRAASQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQSPQAMPQQPMPENMEMDAQAQMYYQHQMPAMPEDPYHQSYLPADPGDMHASMLHDQGYGMYYQGM*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680441;
- 90% Identity
- -
- 80% Identity
- -