Basic Information

Insect: Hedya salicella
Gene Symbol: -
Assembly: GCA_905404275.1
Location: FR990106.1:23618636-23621925[-]

Transcription Factor Domain

TF Family: E2F
Domain: E2F_TDP domain
PFAM: PF02319
TF Group: Helix-turn-helix
Description: This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.043 5.1e+02 1.8 0.0 23 43 8 28 2 29 0.88

2 12 0.14 1.7e+03 0.2 0.0 25 44 73 92 64 93 0.87

3 12 0.024 2.9e+02 2.7 0.0 22 43 123 144 116 145 0.87

4 12 0.9 1.1e+04 -2.4 0.0 29 43 176 190 174 191 0.83

5 12 0.0078 93 4.2 0.0 22 44 222 244 213 245 0.87

6 12 0.32 3.8e+03 -1.0 0.0 22 41 285 304 278 307 0.80

7 12 0.028 3.4e+02 2.4 0.0 22 44 338 360 331 361 0.88

8 12 0.016 1.9e+02 3.2 0.0 22 43 391 412 384 413 0.87

9 12 0.32 3.8e+03 -1.0 0.0 22 41 454 473 447 476 0.80

10 12 0.042 5e+02 1.9 0.0 22 44 507 529 498 530 0.86

11 12 0.012 1.4e+02 3.7 0.0 22 44 560 582 551 583 0.87

12 12 0.27 3.2e+03 -0.7 0.0 22 41 623 642 614 645 0.78

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.043	5.1e+02	1.8	23	43	8	28	2	29	0.88
2	12	0.14	1.7e+03	0.2	25	44	73	92	64	93	0.87
3	12	0.024	2.9e+02	2.7	22	43	123	144	116	145	0.87
4	12	0.9	1.1e+04	-2.4	29	43	176	190	174	191	0.83
5	12	0.0078	93	4.2	22	44	222	244	213	245	0.87
6	12	0.32	3.8e+03	-1.0	22	41	285	304	278	307	0.80
7	12	0.028	3.4e+02	2.4	22	44	338	360	331	361	0.88
8	12	0.016	1.9e+02	3.2	22	43	391	412	384	413	0.87
9	12	0.32	3.8e+03	-1.0	22	41	454	473	447	476	0.80
10	12	0.042	5e+02	1.9	22	44	507	529	498	530	0.86
11	12	0.012	1.4e+02	3.7	22	44	560	582	551	583	0.87
12	12	0.27	3.2e+03	-0.7	22	41	623	642	614	645	0.78

Sequence Information

Coding Sequence: ATGATCTACAGCATCCTGAACCTCGTGCAGTTGTCCCAGGTGTTCGACGAGATCAACTCCATGTACAGGCGAGTGTGGAGCATAAATCCGTCGGACAGACGGCAAGGAGACGATCTACAGCATCCTGAACCTCGTGCAGTTGTCCCAGGCGAGTGTGGAGCATGGTTTCGTCGGACAAACGGCAAGGAGATGATCTACAGCATCCTGAACCTTGGGCAGTTGTCCCAGGTGTTCGACGAGATCAACTCCTTGTACAGGCGAGTGTGGAGCATAGTTTCGTCGGACAAACGGCAAGGAGATGATCTACAGCATCCTGAACCTCGTGCAGTTGTCCCAGACGGCAAGGAGACGATCTACAGCATCCTGAACCTCGTGCAGTTGTCCCAGGTGTTCGACGAGATCAACTCCGTGCACAGGCGAGTGTGGAGTATAGCTCTGTCCAACAGACGTCAAGGAGACGATGTACAGCCTCCTGAACCTCGTGCAGTTGTCCCAGGTGTTCGACGCGATCAACTCCAAGTACAGGTGTTCGACGAGATCAACTCCGTGCACAGGCGAGTGTGGAGTATAGCTCCGTCCGACAGACGGCAAGGAGGCGATCTACAGCATCCTGAACCTCGTGCAGTTGTCCCAGACGTCAAGGAGGCGATGTACAGCCTCCTGAACCTCGTGCAGTTGTCCCAGGTGTTCGACGCGATCAACTTCAAGTACAGGCGAGTGTGGAGCATAACTCCGTCGGACAAACGGCAAGGAGACGATTTACAGCATCCTGAACCTCGTGCAGTTGTCCCAGGCGAGTGTGGAGCATGTTTTCGTCGGACAAACGGCAAGGAGATGATCTACAGCATCCTGAACCTCGTGCAGTTGTCCCGGGTGTTCGACGAGATCAACTCCGTGTACAGGCGAGTGTGGAGCATGGTTTCGTCGGACAAACGGCAAGGAGATGATCTACAGCATCCTGAACCTTGGGCAGTTGTCCCAGACGGCAAGGAGACGATCTACAGCATCCTGAACCTCGTGCAGTTGTCCCAGGTGTTCGACGAGATCAACTCCGTGTACAGGCGAGTGTGGAGCATAGTTTCGTCGGACAAACGGCAAGGAGATGATCTACAGCATCCTGAACCTCGTGCAGTTGTCCCAGACGGCAAGGAGGCGATCTACAGCATCCTGAACCTCGTGCAGTTGTCCCAGGTGTTCGACGAGATCAACTTCGTGCACAGGCGAGTGTGGAGTATAGCTCTGTCCAACAGACGTCAAGGAGACGATGTACAGCCTCCTGAACCTCGTGCATTTGTCCCAGGCGAGTGTGGAGCATGTTTTCGTCGGACAAACGGCAAGGAGATGATCTACAGCATCCTGAACCTCGTGCAGTTGTCCCGGGTGTTCGACGAGATCAACTCCGTGTACAGGCGAGTGTGGAGCATGGTTTCGTCGGACAAACGGCAAGGAGATGATCTACAGCATCCTGAACCTTGGGCAGTTGTCCCAGACGTCAAGGAGACGATGTACAGCCTCCTGAACCTCGTGCAGTTGTCCCAGGTGTTCGACGCGATCAACTCCGTGTACAGGCGAGTGTGGAGCATAACTTCGTCGGACAAACGGCAAGGAGACGATTTACAGCATCCTGAACCTCGTGCAGTTGTCCCAGACGTCAAGGAGGCGATGTACAGCCTCCTGAACCTCGTGCAGTTGTCCCAGGTGTTCGACGCGATCAACTCCAAGTACAGGCGAGTGTGGAGCATAACTCCGTCGGACAAACGGCAAGGAGATGATCTACAGCATCCTGAACCTCGTGCAGTTGTCCCAGGCGAGTGTGGAGCATGTTTTCGTCGGACAAACGGCAAGAAGATGATCTACAGCATCCTGAACCTCGTGCAGTTGTCCCGGGTGTTCGACGAGATCAACTCCGTGTACAGGCGAGTGTGGAGCATGGTTTCGTCGGACAAACGGCAAGGAGATGATCTCCGGCATTCCTGA
Protein Sequence: MIYSILNLVQLSQVFDEINSMYRRVWSINPSDRRQGDDLQHPEPRAVVPGECGAWFRRTNGKEMIYSILNLGQLSQVFDEINSLYRRVWSIVSSDKRQGDDLQHPEPRAVVPDGKETIYSILNLVQLSQVFDEINSVHRRVWSIALSNRRQGDDVQPPEPRAVVPGVRRDQLQVQVFDEINSVHRRVWSIAPSDRRQGGDLQHPEPRAVVPDVKEAMYSLLNLVQLSQVFDAINFKYRRVWSITPSDKRQGDDLQHPEPRAVVPGECGACFRRTNGKEMIYSILNLVQLSRVFDEINSVYRRVWSMVSSDKRQGDDLQHPEPWAVVPDGKETIYSILNLVQLSQVFDEINSVYRRVWSIVSSDKRQGDDLQHPEPRAVVPDGKEAIYSILNLVQLSQVFDEINFVHRRVWSIALSNRRQGDDVQPPEPRAFVPGECGACFRRTNGKEMIYSILNLVQLSRVFDEINSVYRRVWSMVSSDKRQGDDLQHPEPWAVVPDVKETMYSLLNLVQLSQVFDAINSVYRRVWSITSSDKRQGDDLQHPEPRAVVPDVKEAMYSLLNLVQLSQVFDAINSKYRRVWSITPSDKRQGDDLQHPEPRAVVPGECGACFRRTNGKKMIYSILNLVQLSRVFDEINSVYRRVWSMVSSDKRQGDDLRHS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -