Hdys032947.1
Basic Information
- Insect
- Hecatera dysodea
- Gene Symbol
- -
- Assembly
- GCA_905332915.1
- Location
- HG995316.1:4241122-4244629[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.001 0.11 14.0 0.2 1 23 78 101 78 101 0.96 2 22 0.25 27 6.5 0.1 2 23 128 149 127 149 0.96 3 22 2.4 2.6e+02 3.4 0.8 2 23 172 193 171 193 0.94 4 22 1.2e-05 0.0013 20.1 1.4 1 23 197 219 197 219 0.98 5 22 0.94 1e+02 4.7 0.2 1 23 224 247 224 247 0.88 6 22 0.028 3 9.5 1.1 1 23 253 276 253 276 0.90 7 22 0.14 15 7.3 2.1 1 14 283 296 283 298 0.92 8 22 9 9.6e+02 1.6 0.5 1 19 349 367 349 371 0.73 9 22 0.15 16 7.3 0.2 3 23 397 418 395 418 0.91 10 22 3 3.2e+02 3.2 3.4 1 23 440 462 440 462 0.97 11 22 0.00013 0.014 16.9 0.9 1 23 466 488 466 488 0.97 12 22 0.013 1.4 10.6 0.2 1 23 493 516 493 516 0.93 13 22 0.65 70 5.2 0.1 1 23 557 579 557 579 0.90 14 22 3.9 4.2e+02 2.8 0.1 2 23 603 625 602 625 0.94 15 22 0.00014 0.015 16.8 2.8 1 23 649 671 649 671 0.98 16 22 0.00054 0.058 14.9 1.9 3 23 677 697 675 697 0.97 17 22 0.034 3.7 9.2 2.4 1 23 705 728 705 728 0.94 18 22 5.7e-05 0.0061 18.0 1.1 1 23 734 757 734 757 0.98 19 22 0.13 13 7.5 2.7 1 23 763 786 763 786 0.96 20 22 1.2e-05 0.0013 20.2 0.7 1 23 792 814 792 814 0.98 21 22 5e-06 0.00054 21.3 1.1 1 23 820 842 820 842 0.99 22 22 3.6e-05 0.0038 18.6 4.8 1 23 848 870 848 871 0.95
Sequence Information
- Coding Sequence
- ATGTTCCGGGGGGCTGGTTCCGCTACCGAAGCGGAGGGGAATCTAGGCCTTAGACGCATTAGGAAGTTAAAGGAAAACGTTAGCGACCGACAGATGCGCAGGCGACGACGCGCCAACAACCAGCTCCCCGAAGAATCGGAGAAACGAATATCTAAAACCATGATGCGTCGAAACGCTCTTATTCTTCTAGAGTGTTCTACAGCCTGGGCCTTCCGGTGGTTCCATAGCGCATTCTATTGCTCTTACTGCGACGCTAAGTTCGTCGATGTACCACTGCTCCGCTCACATATCAAAGCAAACCATCTAAACGACATACCCACTGACAGAATCTTCTCgaagttaaaagaaaataatatggtCAAAGTAGATGTAGCCGAGCTTAGTTGTAGGTTGTGCAGCAGAATCTTAAACAGCATTGACGCTTTGAAAGACCATCTTCTCATACACGGCAAAACTTTGAACGTAGAATACAGTGATGGAGTATTACCATTCAAGTTAGACGAAGAAGTCTTAACATGCCAGCTGTGCTTCGCTCAGTTCCTTACTTTCGCCAAAATGAATGAACATATGAACAcgcattttcaaaattacattTGCGATTCTTGCGGCAAAGCTTTTTCTTCTAAATCGAGATTTAGAAAACACGTGCAGTCGCATGAAAAGGGAAGTTTCCCTTGTGGGGAATGTGGTGAAGTTTTGGAAACGCGAGCGTCTCGAATGTGCCATATCATGAGGATCCACAGAAAAGGCGTTCGCTACGCTTGCCCAAGATGCACTGAAGTCTTTACAACTTACCACACAAGGGCAAAGCATTTAGTAGAAACACACGGTCAACAGAAAAAAGAATACTACTGTAATTCTTGCGACAAAACTTTTGAAACCAGCTCCAAGAGAGCAGGGACGATAGAAGACAAAGATATGGCAGCAGAAAAGACTACTAAAATTTCGTGGAAGAGAAAACGCCGAATAATAGAGGACTCGGCAAATGcagctattataataaaaaactcgAATGCAGTGGTATTCAGGTTGCATAGAGGCAAATTCATGTGCGCTTACTGCCCAAAAATATGCTTAAACGTTTCAGAAATCCGAATTCATTCAGTTAACCATGAAAAACTTGACATATTCGAGAATCCCGCTGTGAGAAACTCGTTTCCTCTTCGAATCGATATCACAGATCTGGCCTGCACTTTATGTGGGGAAAAGACACAAAATATAGACAAATTAAAGACACATTTAGCAGAACAGCATTCAAAGATGATTGATCCCGAGTTTTCGGATGCTGTCGTTCCCTTCGTCTTAACTGGTAAAGAATACAGATGCGTTCACTGCAGTTTACTGTGCGAAGGTTTGATGTCTTTATTTACGCACATGAATCAACATTACCAAAGTCATATTTGCCCTTCTTGTGGAAAAGGATTTTCGGGACGCAACAAACTTCGCAGCCACGTACTCACTCACCAATTGGGACAATTCAAATGTTCAAAATGCGACTCTGTTTTTCCTTATCGTGCAGCTAAGAACCGGCATTTGGCTGCAGCTCATGggGTCGTCGAACTCACAGTAAAATGGAGACCGACACGCAAGTATAACGATCACAGAGATAATGCCGCTATCATTCTCGAAAGTTCCAACGCTTGCCCCTTTAGGTGGCGCCGGGGCTCCTTCGCGTGTGCGTACTGCCCGCTTTCCTTCGGAGACTTTATCGGTGTCAAACAACATACCGTTAACCACCCCAATCGGATCGAAGCTCTCCGCAAGGCTCGACCCTTTGCAAACGTCAAAATGGAAGTCACTGAGTTACGATGCGAATTATGTCTCATGCGAATGACGGACTTAGATGCTCTTTCCGAACACTTAATAAAAGATCATAATAAACCAATAGTTGCTAAGCTCGGTTTAGGTGTCACGCCCTTCTATCTAACAGAAGACAAGGAAGAGTACAAATGCACTCATTGCGCTGAAACTTTCGTTACATTCACTAATTTGAACACGCATTTGAACTTGCATTACCCAAATAGTATCTGTTTTCAATGCGGGAAAGCTTTCTCGTCTATACACCGGTTAAAATCTCATTTGCTCACCCACGATGCAGCGACCACGTCACAGCACAAATGCACTAGATGCGACCAAGTTTTCCCCAGTCGTGTCTTAAAAAACAATCACATAACCCAAAAACACGGGCCGGAGTTCAGATATAAGTGTCCCTACTGCAAAGAATCCTTCAAAAACTACGCTGACAGAGGAAGACATCTGAAAACGGCGCATGACAAAAAGATCGAATACCCGTGCCATTTATGTCCATCAGTTTTCGCCATGTGCAATCAAAGGACGAAACATATTAAACAAGTTCATATGAGAATTAAGACGTTCTCGTGCAGTTTTTGCCCGTACAAATTTGTGACAGCTGCTCAGTTGAGGAATCACATGATCAAACATGGAGGGGAGAGGAAATATCAATGTCAGGTGTGCAAGAAAGCGTATGCCAGGACTAAAACATTGAGGGAGCACATGAGGATACATAATAACGACAAGAGATTTATTTGTGAGTACTGTAACACTGCGTATGTTCAGAAATGTAGTTTGCAGAGTCATATGAGGACGCACCATCCGAATGCGGAGCCTTTGAAGAAGATTAAgctataa
- Protein Sequence
- MFRGAGSATEAEGNLGLRRIRKLKENVSDRQMRRRRRANNQLPEESEKRISKTMMRRNALILLECSTAWAFRWFHSAFYCSYCDAKFVDVPLLRSHIKANHLNDIPTDRIFSKLKENNMVKVDVAELSCRLCSRILNSIDALKDHLLIHGKTLNVEYSDGVLPFKLDEEVLTCQLCFAQFLTFAKMNEHMNTHFQNYICDSCGKAFSSKSRFRKHVQSHEKGSFPCGECGEVLETRASRMCHIMRIHRKGVRYACPRCTEVFTTYHTRAKHLVETHGQQKKEYYCNSCDKTFETSSKRAGTIEDKDMAAEKTTKISWKRKRRIIEDSANAAIIIKNSNAVVFRLHRGKFMCAYCPKICLNVSEIRIHSVNHEKLDIFENPAVRNSFPLRIDITDLACTLCGEKTQNIDKLKTHLAEQHSKMIDPEFSDAVVPFVLTGKEYRCVHCSLLCEGLMSLFTHMNQHYQSHICPSCGKGFSGRNKLRSHVLTHQLGQFKCSKCDSVFPYRAAKNRHLAAAHGVVELTVKWRPTRKYNDHRDNAAIILESSNACPFRWRRGSFACAYCPLSFGDFIGVKQHTVNHPNRIEALRKARPFANVKMEVTELRCELCLMRMTDLDALSEHLIKDHNKPIVAKLGLGVTPFYLTEDKEEYKCTHCAETFVTFTNLNTHLNLHYPNSICFQCGKAFSSIHRLKSHLLTHDAATTSQHKCTRCDQVFPSRVLKNNHITQKHGPEFRYKCPYCKESFKNYADRGRHLKTAHDKKIEYPCHLCPSVFAMCNQRTKHIKQVHMRIKTFSCSFCPYKFVTAAQLRNHMIKHGGERKYQCQVCKKAYARTKTLREHMRIHNNDKRFICEYCNTAYVQKCSLQSHMRTHHPNAEPLKKIKL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00726707;
- 90% Identity
- -
- 80% Identity
- -