Basic Information

Gene Symbol
-
Assembly
GCA_905332915.1
Location
HG995296.1:15193660-15202220[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.011 1.1 10.8 1.6 3 23 686 707 685 707 0.96
2 23 0.23 25 6.6 0.3 1 22 1093 1114 1093 1114 0.95
3 23 3.7 4e+02 2.9 0.5 1 20 1156 1175 1156 1179 0.81
4 23 0.023 2.4 9.8 3.9 2 22 1189 1209 1188 1209 0.93
5 23 0.1 11 7.7 0.1 2 23 1217 1239 1216 1239 0.89
6 23 0.02 2.1 10.0 0.2 3 23 1260 1281 1258 1281 0.96
7 23 0.0011 0.12 13.9 3.4 1 23 1287 1310 1287 1310 0.95
8 23 0.14 15 7.3 0.0 1 23 1336 1359 1336 1359 0.90
9 23 0.021 2.3 9.9 3.4 1 23 1364 1386 1364 1386 0.97
10 23 0.0097 1 11.0 0.2 1 23 1392 1415 1392 1415 0.95
11 23 0.0045 0.48 12.0 0.8 1 23 1428 1450 1428 1450 0.97
12 23 0.0002 0.021 16.3 1.8 1 23 1500 1523 1500 1523 0.97
13 23 0.0017 0.19 13.3 1.0 1 23 1582 1605 1582 1605 0.96
14 23 0.0027 0.28 12.7 2.1 2 23 1633 1655 1632 1655 0.95
15 23 0.044 4.7 8.9 0.1 2 23 1661 1683 1660 1683 0.94
16 23 0.011 1.2 10.8 0.2 1 21 1727 1747 1727 1748 0.95
17 23 0.00047 0.05 15.1 1.0 1 23 1758 1780 1758 1780 0.93
18 23 0.00013 0.013 16.9 0.3 2 23 1873 1895 1873 1895 0.93
19 23 4.4e-07 4.7e-05 24.6 1.4 3 23 1902 1922 1901 1922 0.98
20 23 0.025 2.6 9.7 0.3 1 23 1940 1962 1940 1963 0.95
21 23 0.16 17 7.1 0.0 1 23 1986 2008 1986 2008 0.98
22 23 0.031 3.3 9.4 0.6 1 23 2014 2037 2014 2037 0.95
23 23 0.00029 0.031 15.8 0.4 1 23 2045 2068 2045 2068 0.96

Sequence Information

Coding Sequence
ATGAATGTGAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAACCTCCCGTCCTCGCTTTGAAAATCAAGGATTGTGTGTCCGTACAGATAAACGAAAATGACGACCTGCCTACTAATGTCTGCAGGAAATGCATGGACAATGTCAATAACTGGcatgtttttaaaaatgtatgtgaAAGGACACAAAACAAACTACAGTCTCTGAAAGATGGCAGCCAACTAGAAGAGgtgaaaataaaaagtgaaccACTATCTGATGAGGCTTATGATGATGGAGTGGTCATTGATGGCTCATATCCTGTCATTGAGAATGCTGGCTTTTCAAACAAAGTACAACCGGAAGGTCCCCCAATCTTGGCTTCATTGGGGCTCACACCAAGAAGTGATAAGAGATGTGTGGATCCTCGAATGGATTGGCATCGGGTCCATGCAATTTTGGACATGATTCAAGACAATGAGGTGATTGACTCTCTGCAGACAAAGGAAGAGTGTGATGTTTTGCAGCGATCTGATCATGACTCAGATTCAGAAGCTGAACTCCAAACAGAAATTGATGATGATTATGTTGATTGCAAAAGCGGTTacatttgcaaaaataaaaaagtcatatCAAAAGCTCCGAAACTTTCAACTTCTGTAAATAATGCCAGAATTAAAGAAGCTTTCAAACTCAGGAAACGTAAACTAGAAGTTCGTAAACATTGTTCACGACCTAAAAATGCGTGGCAGTTGTTATTCACCGATGACCTACTAGAATTGATTGTTGCTTCAACTAATGACAATATTGTGACAAATGGGAAAAGTTTCATGGAGTCAACTAACGTCAGCGAAATTAAAACGCTTATCGGTATTCTGTATCTGCACGGCATAATGCGGCCGACGCATCAGAAATGTACTGACCTTTGGAACAGTGAATGTGGCGTTCCTTGCGTCAGGAATGTCATGAAATACGAAAGGTTCAAATTCTTGCTTCAAAACATGAGCTTCGATAAAGAGGACGACGACAGCATTATACAGTACGACATAATGAAGCGTATGCGTAAAGTATTCGAAATCTTCGCCATGAATTGCAGAACATCTCACGATATCGAGAATGTCGCGGTTATTGATGAGATCATCGTGCCAGTTTACGGACCTTGCCCATTTCGATACGATATTGATAAGAAGCCGCTGAAGCGGGGCATAAAAATGGTGCTGCTAGTTGATTCATCCACATTCTACGTGAGCAATTTAGATGTCATTACTGATCCTTACTTTGGCGCCGAAGAGATAACGAAAAAGTTGGTTCAGCATTTAGCTGGAACTGGCCGGTCTATTGTTATGGACAGTTGGTTTACATCTTCCTCGTTGATGGATAGCCTTAAAAATGAGTACCAGTTGTACTCTATCGCAGCCCTGAATCCAAACAGTGATATGATTCCGCCGTTATTTTTATCTCAATACAGGAAAACTCGAACATTCATGTCTGGATTTATTGATGATGAAGTTTCACTGACATCCTATGTCAATACTGAGGGCAAATCAGTAAATGTGTTGACGAATGAGCCCAGATATTACAGAAAAGGTCATATAAATCATACAACCGTTGTGTCAGTGTATAAGAAGTCTCAGTCTGCTGTAGAAGTGGTGGATGTTCTCATGAATTACTACACAACAATGCAACACACAAATCATTGGACATTgtctttatttttcacattgcTGAATATTGCATCAGTGAATGCTCAAGTCTTATGGTGCTCTCAAAACTCGAATGTTACGCAGCGTCGTTTATTTATCAAAGATTTAGCTTTAGGCTTGCTTGAACCAGAGGAAGAAAGAATGTTAATATCTCCGGGTGCGGAGAGTGAAAATAATGAAGAGGATGAGGAAGAAGCTAACGAGCCCGCCCAAAATTTCCCGAAAATGCCCCACATGCCCGAGGTATCCATCACGGTCATGAGACCCACTGGTGAAACCCTGCATGCTCGCCAAGGTATTCACCAACTCGCCTCCAAACTTTGCCTCGTCTGCGGCCGCTCCTACAGGTACTCTCATAACGCACGTAGACATGAACTTACCTCCCACGGCTTCGACAGGTATACAAACAAAATTACGCCTAAAAAAACCCTCAATCATCTACAACCTAAACTCAGACCGAACCCATTCAACCCCAAAGCACGGATGATGCCAAATCCTATTAGTCATAAGATGCAGTTCATGAACAAGAACATGCCAACAAAAATAATGCCCATGAACAAAGTTATAACGCCACAGAAACCTATTCCAATAAAGACATCAACAAAGACACAAAATAATTTACCTTATCCTCTACGCATTAAAGCactcaaagatttacaaattaagAAAAAGGAGCCTCAGATTCTAAAGACGTTGTTAACATCTAAACCCGAGGTTCTGGTTTCAGAACCAGAAATTTTAAATTCTGGACCTGAGAGTCCGGAAACATTGATATCTGAACCAGAAATCGCGTCTTTTCAAGTCGAAACTATCCTTACGGAACCCGACGCCGACGCATACGATGATCCACAGCAAGGCGACGAAGAAGTTGATGAAGAACTGCAGAacaatcaaagtcaaaactaTGACACAGTCGATATGGACTCTGAAAACGAAATAGAGATTGCTCGTCAGCAAGGCATGGAACACGACGGCGAGGAAAATGCTGAGGGGGAAGAGAATATCGATCATGATGACGACAACAATATGGAAGGTGCTCAGAGCGATAACGAGAAAGATGGCAATGACGATACAGCTGAAAGTCAAGAGAACATGGATGAAGAAGGTAGTGTTGAGGTTAAACCTGAAGATCAAATGAAGGACGACGAGGATCAAGAGGAGGCTGAACATGAAGAAGTAGAGATGAATCATAACGAGAACGAGGAAGATGACGATGAAGAGCTTCCTATATCATTAGCGCCAGTCGTTGAGATAAATGAAGGATTACAAGCCAACTCGTTTAACAGTGAAGTCAATGAAGAAGACGAGGAACTCGACGAAACCGTCGATCCTAATGAAACCGTTGAAGATGAGGAGCAGCAGGTTAAAGAACTTGACCCTGACAAAACATATGTTACTAAAACCCAAAGAGACTTCATCCATAAATATCGCGACATTATTCAGCAAATCAATACGAAGCGCTGTCTGTGTTGTGATCGTGAACATCCGCGAAGAAAAGCTGTAATACAACACTTGCAGAAAAACGGACACAAGGTACCAAAACACACTTGTTACAATTGTGTCATCACGTTCGGACATATTGGCGCACTATTGAGCCATATGAGGTCGAACTCTTGCACTAATCTGTGGAAGATTATCTACAATGAAAATGGCATTACTGACGACTTGGTTCTCGAAGATGAGCCGAAAGAGGTCAAGGTTGCTTACAAAGATATTTTCAATGCTAGGTCGTACACTTGTAAGCTCTGCCCAGCTAAATTCCAACTGAAACAGTTTATCATGAAGCATGTGGCAGACACTCATGAAGATGGCCAGTCTAGGGTACCGCTCTGTTGTGTCCACTGCCGCGCTCGGTTCAAAGAAAAGAGTTTACTGAAGAAGCACATTCGCAAAGGTGATTGTACAGTTTATATCTCTTGTGATTTGTGCTCGGAAACGTTCAGGAACATGCAGGACTTCAACGACCATGCGCTAGCCATCCACGCTGGCAGTTTCGATCAGTCCGATAATCAGAGTAAATGTGTTGATGGTCGGCCGACCGACTGTCCTTTGTGCGGAAAGAAAAACAGCAGCTATCCGAATTTAGTAAAACATTTGAAGATTATACACGCGGAGGAGAAACCTCACTACTGCCAACATTGCGACGCTAAATTCGAGCAATCTAATGATCTAAACAAACACATTTACATGGAGCATTCTGACAGAACATTAGGCATGCCGCCCGCTGAGCCGGATATGTCCATAGTGAAGGAAGAAGCAGAGGAGTACCATTACTCCTGTACAGAATGTAATGCTATATTCGAAACTGTTGATGCGTGGACTGATCACCAAGTCGCCGAACATAACCAGGTAGCCCATCACTGTGACCAGTGTGAGAAGAAATTCCTTCGTCCGTCAGAGCTAGCCGAGCACAAGAACACTCACTTGAGAGTTAAATTCTATCCTTGCAGTGTATGCCCCAACTCATACAGCACTCCACAGAAACTATCTGAGCATGTGCAACAGTCACATCCAGGAATTGGCGCAGTCGCGGCAGCCGAGTCGGAATTCTTCTGCGACATCTGCATCAGAGCATTCAAAAGTCGCCAAGCTTATTCAAACCATATGCGTATTCACGCTAAAGTACCTACTACTAACAGGAAACCAACAACAGGTAAAGAAGGATTCGCGCCCCAAATCATCGGGAAACCCATCAAACAATACCCCGTGGTTCAACCTGGGTTTGTGTCATTTAAACCTAGCTACAACATCCCTAACGCTCCGTATTCTTGTGACATTTGTGGTAAAGGATttatgcacaaaaagaatatATGGAAACACAAGAAAGTGTTGCATGCTGATATTTTAGTCGATAGACATGATAGTGAAGAGAACACTATGCAAGCTTCCACTGAAGAGGAGGAATTCAACCCCGACGAGAACGGTGCCATTCTCTCAACGCCACAATTTAACAGTTTTAACTTCACGAACTTTACGAACAATGCTCAACAAACGCCACCAGACATGCCTTATGAATGTGATATTTGTAGCAAACGTTTCCCGCTTAAGACCAGTATGTGGAAACACAAGCGCGCTAAACACGGAATTGTAAACCCTAGCACTAGTGGTAACCACGATGCAACATCAACGCCATCCGCTAGCGGGGAAGGCAGTAGTAGATCTAGCTGCACTATATGTAGAATCACATTCTCAGATAAGAAATCTTATTATCGCCATCGAAAGAATGTCCACAAATCTACCGTTCAAATGTGCAAAATATGTGGCAAACCGTTAAGTTCAACTTTGGAACTATACGAGCACTTGAAAGCCGCTCATGCAAGAGAACTACTTGGTTATAACGCTAACCAAGGCTCCAGTAAATCACAAGATGTGTCACAAGATATTGAACCTGATTATGAAAATGATCAGGAGTCAGCCGACCCTAGCGTCGACTACCAAGCGCGCTACCCATGCGATACCTGTGGCAAACAGTTCGTTGGTCTGCTAGCGTTGCAAAACCACCAATGCATCAACCAGGTGCCATCACAACCACAGACATTTGACTGCGAGATTTGCCACAAGAGCTACACTTCGATATCTGCATTAAAAAGCCACCGTGGATGGCATTTACGTTCGCCCGATGGAAAGGCAGCCGCCAATAACTCTGGCCTTTGGATGCCTCAGCACAAAGTTACTAGCAAGATAAGTAAACACGAAGTCATCGACCCCTCTCAACTTGCGAAGGTCACACATACTCCCACTCCCCCTCCTGTTACAGCGACCGCAGCGAAAAGAAGACTACCACCAGAGGTCGAAGTGACAGTCGTAAATCCAAACAAGAAATTGCGGTCTGACGACTCGGTCGACATGGATATGCCAAATTCTGGTTCAATCGAGGATAGGTACTGTACGATTTGTGACAAGGAATTTACAAAACGAGCGGCGTATCAGCGCCACATGGACGAGGTACATCAACCGAACTCCGTGTTTTGTCCGGTCTGTGATAAGAGTTTTACAAGGAAGTCGACATTGCTCATTCACATGAAGAAACACTACGAAAGTGGTGAGGGCAGTTCCTCTGCTACAGGTCAAGGGGACGATGATTATTCCTGCGATTTGTGTGGCGCTCAGTATGACAATGATCAGGCGTTGAGGGCGCACCGAGCGCGGCACCATGGGGAAGATGAAGAGTCGGCAGAAGAGAGTGATGACGGAAATGTTCCTATAGCCCCTCCCGGTGAATTTACATGTGCGCAGTGCGGCGATGGCGTTGCCACTCCCAGGGACCTCATCGCCCATCGCTCAATGCACGCAACTCCCACCAAGTTCTTCTGTAACATATGCAAAGTGTACTTCGCCCGGGCGCTCGACCTGTCCTCGCACACTCGGGCGCGACACGCTGACAACGAAAAGGTATTCTTCCCGTGTGCCATGTGCGACAGGTTTTACATGAACAAGAAAAGTTTACAGCGGCACATCGAGATGGCGCACTGA
Protein Sequence
MNVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLALKIKDCVSVQINENDDLPTNVCRKCMDNVNNWHVFKNVCERTQNKLQSLKDGSQLEEVKIKSEPLSDEAYDDGVVIDGSYPVIENAGFSNKVQPEGPPILASLGLTPRSDKRCVDPRMDWHRVHAILDMIQDNEVIDSLQTKEECDVLQRSDHDSDSEAELQTEIDDDYVDCKSGYICKNKKVISKAPKLSTSVNNARIKEAFKLRKRKLEVRKHCSRPKNAWQLLFTDDLLELIVASTNDNIVTNGKSFMESTNVSEIKTLIGILYLHGIMRPTHQKCTDLWNSECGVPCVRNVMKYERFKFLLQNMSFDKEDDDSIIQYDIMKRMRKVFEIFAMNCRTSHDIENVAVIDEIIVPVYGPCPFRYDIDKKPLKRGIKMVLLVDSSTFYVSNLDVITDPYFGAEEITKKLVQHLAGTGRSIVMDSWFTSSSLMDSLKNEYQLYSIAALNPNSDMIPPLFLSQYRKTRTFMSGFIDDEVSLTSYVNTEGKSVNVLTNEPRYYRKGHINHTTVVSVYKKSQSAVEVVDVLMNYYTTMQHTNHWTLSLFFTLLNIASVNAQVLWCSQNSNVTQRRLFIKDLALGLLEPEEERMLISPGAESENNEEDEEEANEPAQNFPKMPHMPEVSITVMRPTGETLHARQGIHQLASKLCLVCGRSYRYSHNARRHELTSHGFDRYTNKITPKKTLNHLQPKLRPNPFNPKARMMPNPISHKMQFMNKNMPTKIMPMNKVITPQKPIPIKTSTKTQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEILNSGPESPETLISEPEIASFQVETILTEPDADAYDDPQQGDEEVDEELQNNQSQNYDTVDMDSENEIEIARQQGMEHDGEENAEGEENIDHDDDNNMEGAQSDNEKDGNDDTAESQENMDEEGSVEVKPEDQMKDDEDQEEAEHEEVEMNHNENEEDDDEELPISLAPVVEINEGLQANSFNSEVNEEDEELDETVDPNETVEDEEQQVKELDPDKTYVTKTQRDFIHKYRDIIQQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRSNSCTNLWKIIYNENGITDDLVLEDEPKEVKVAYKDIFNARSYTCKLCPAKFQLKQFIMKHVADTHEDGQSRVPLCCVHCRARFKEKSLLKKHIRKGDCTVYISCDLCSETFRNMQDFNDHALAIHAGSFDQSDNQSKCVDGRPTDCPLCGKKNSSYPNLVKHLKIIHAEEKPHYCQHCDAKFEQSNDLNKHIYMEHSDRTLGMPPAEPDMSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCPNSYSTPQKLSEHVQQSHPGIGAVAAAESEFFCDICIRAFKSRQAYSNHMRIHAKVPTTNRKPTTGKEGFAPQIIGKPIKQYPVVQPGFVSFKPSYNIPNAPYSCDICGKGFMHKKNIWKHKKVLHADILVDRHDSEENTMQASTEEEEFNPDENGAILSTPQFNSFNFTNFTNNAQQTPPDMPYECDICSKRFPLKTSMWKHKRAKHGIVNPSTSGNHDATSTPSASGEGSSRSSCTICRITFSDKKSYYRHRKNVHKSTVQMCKICGKPLSSTLELYEHLKAAHARELLGYNANQGSSKSQDVSQDIEPDYENDQESADPSVDYQARYPCDTCGKQFVGLLALQNHQCINQVPSQPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKISKHEVIDPSQLAKVTHTPTPPPVTATAAKRRLPPEVEVTVVNPNKKLRSDDSVDMDMPNSGSIEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLIHMKKHYESGEGSSSATGQGDDDYSCDLCGAQYDNDQALRAHRARHHGEDEESAEESDDGNVPIAPPGEFTCAQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00017541;
90% Identity
iTF_00952905;
80% Identity
-