Hdys021089.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hecatera dysodea
Gene Symbol
-
Assembly
GCA_905332915.1
Location
HG995304.1:8998743-9010037[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00011 0.012 17.1 0.1 3 23 135 155 134 155 0.97
2 19 9.8e-07 0.0001 23.6 1.2 1 23 161 183 161 183 0.99
3 19 6.1e-06 0.00065 21.1 2.7 1 23 189 211 189 211 0.99
4 19 4e-06 0.00043 21.6 2.6 1 23 226 248 226 248 0.98
5 19 0.00017 0.019 16.5 0.6 1 23 263 285 263 285 0.98
6 19 5.6e-05 0.006 18.0 3.1 1 23 300 322 300 322 0.98
7 19 3.9e-07 4.1e-05 24.8 1.5 1 23 337 359 337 359 0.99
8 19 0.00017 0.018 16.5 2.8 1 23 365 387 365 387 0.98
9 19 0.0002 0.021 16.3 0.0 1 23 394 416 394 416 0.97
10 19 1.2e-05 0.0013 20.1 2.1 1 23 422 444 422 444 0.99
11 19 0.039 4.2 9.1 1.8 1 23 451 473 451 473 0.98
12 19 6.6e-07 7e-05 24.1 2.3 1 23 479 501 479 501 0.99
13 19 0.045 4.9 8.9 1.8 1 23 508 530 508 530 0.98
14 19 2.7e-06 0.00029 22.2 1.5 1 23 536 558 536 558 0.99
15 19 0.00051 0.054 15.0 0.7 1 23 565 587 565 587 0.99
16 19 3e-06 0.00032 22.0 1.9 1 23 593 615 593 615 0.98
17 19 0.0022 0.23 13.0 0.3 1 20 621 640 621 643 0.93
18 19 3.6e-05 0.0038 18.6 1.3 2 23 650 671 649 671 0.96
19 19 3.2e-06 0.00035 21.9 1.3 1 23 677 700 677 700 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATCAAGGCTGAACCTATGAGtttctACACATCTCATCCCCACGTACACTCCGGTCCCCCAACAATAATACGGTCCGACTCAAGCCATGCATCCATCATCAACATGAACCAACATCACCAACAACACCAGGAGGATTCTAAAGACAGCCTGATAGTACAACATCAAGTACAACACCAACAAGATCTCATGGAACAACATCAACAACACCAAGAAATGCAGCAACAAGACGACGAGCTGAGCTTCAAAGGAATGGAAGATGAAGGAGTTGACATGGATATGGACGGACGACAATGTTCGCAGGGTATGGGAGTTGACATGGGATCGGTTCAAACTAAAATGGAAGTATCAAATGGGGGTCAGTCGACGCCACGATCTAAACCCCAAGCCTGTAAGGTCTGTGGCAAAGTTCTATCGTCGGCTTCTTCTTACTATGTTCACATGAAGCTTCATTCAGGAAACAAACCGTTTCAGTGCActGTGTGCGACGCAGCTTTTTGCCGTAAGCCGTATCTAGAAGTACACATGCGCACACACACAGGGGAGCGCCCCTTCCAGTGCGACCTGTGCCTCAAGCGATTCACGCAGAAGTCCAGTCTCAACACGCACAAACGTGTTCACACAGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATTCACACGGAGGAACACAGACGTGCGCTGCTGGCTAAGGATCGACCCTACCAATGCGGCGTCTGCTTTGTGAGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGAAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGACATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTTGGTACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGTGCAAGGGCGTCCTTTCGCGTGCGGGCAATGCCCGGCGGCGTTCGCCCGCCGCCCCTACCTGGACATTCACATGCGCACGCATACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGGCCGTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCCAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAGGGGCGGCCCTTCCAGTGCCTGCAGTGTCCGGCCGCCTTCACGTGCAAGCAGTACCTGGAGATCCACAACCGCACGCACACCGGCGAGCGGCCCTACCAGTGTGACGTATGCCTCAAGAGATTCGCGCAAAAATCTACACTCAATATACACAAACGAACGCACACAGTGCAAGGGCGTCCGTACCAATGCATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCGTATCTGGAGATACACATGCGTACGCACACGGGGGAAAGGCCGTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCTACGCTCAACATTCACAAGCGAATTCATACCGGTGAACGTCCTTATGCTTGTGATATTTGTCAGAAACGTTTTGCTGTGAAGAGCTACGTAACAGCGCACAGATGGTCCCACGTGGCCGACAAGCCGCTGAACTGCGACCGCTGTTCCATGTCGTTCACATCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACTCCACGGGCTCTTGCTACGAGTGCAGCGTCTGCGGTCGTTCCTTTGTCAGGGACAGCTATCTAATAAGACACCACAACCGTGTCCACCGCGAGAACCACAGCAACGTGTCGGCCAATAGCATGGGCACCATCAACAGTGTTGCCACCAACACCAACAACTCGAACAACAGCAACTTTGACTCACCCGGCGTTTGTGACTTAAGCTTCGTTCCCATGGTGAATCGTTACATGACATCTCAGGGGACCCAAGTGTCCATGCAGGATACCAGCAAAATGTCTGCGATGTCGCCCCAATCTATCGCGTCTATTTcGTCGCCCCCTCCCTCGCATACCCCTACGCCCCAGCCCCAAATGTCTGGTCAGATGCATCTTGCTGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHPHVHSGPPTIIRSDSSHASIINMNQHHQQHQEDSKDSLIVQHQVQHQQDLMEQHQQHQEMQQQDDELSFKGMEDEGVDMDMDGRQCSQGMGVDMGSVQTKMEVSNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLAKDRPYQCGVCFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPFACGQCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMSFTSKSQFALHIRTHSTGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSMGTINSVATNTNNSNNSNFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSAMSPQSIASISSPPPSHTPTPQPQMSGQMHLAD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_01085626;
80% Identity
-