Hgla017044.1
Basic Information
- Insect
- Hebomoia glaucippe
- Gene Symbol
- egg
- Assembly
- GCA_025727935.1
- Location
- JAOSYY010000014.1:4275590-4287593[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3 5.5e+03 -2.7 0.0 29 38 79 88 54 89 0.56 2 2 8.6e-14 3.7e-10 39.5 0.1 4 75 121 185 118 187 0.89
Sequence Information
- Coding Sequence
- ATGCCGCGGTGCAAGGCGCGCGAGCGAGTAGCTTTCGGGCTGGAAGGTTGGAGGGCACTGAAGttaAATATGCCAATTGTGGAGTACACACGATCGGACGACCTGGCGAAGTCGGTAGAACTTCAGAATTTGAGGGAATTAAATAATGAGGAGCTTCGTCGGCAGCGCTCCGTTGCTAAAAAGTCGACAACAGCCCCGCAAACGTCGCCAGCACCAACCGCCAAGCCTGAAAATTTCACTAGCAGAGTGGTGTTCTACACTCCCAAACTTGCAGTGCGTCCATACAAAATCTCTGCGAATCATGTATGTAGTCCGAACTGTAAGAGGACTGATGTGTTAGGACTAAAAGAATTAAGAACATACAACCCGTTGGCTAAGCCGCTACTCAGTGGCTGGGAAAGGCAATCGGTGAAGTGGAAGTACGACAAACGAGTGATGTACCGGTCGCCGTGCGGTCGGCGCCTGCGCACCATGGAGGAACTACATCGTTACTTGAGAACCATACAATCGGATATGGGACTGGACTTGTTCGACTTCAGTCCGAACACTCACTGCCTCGCCGAATTCACGATAAATAACACTATTATATCGAAAAAGATACTCGTTTCCAGTAGTGTATGGTCAAGTTTCTTTATGTTTGGATTGTGTATGGGAACACCAACTATATACATTACCCAAACTAGACTTGAGGCCAATTCGACGGAGGTTATCAGCAATGAAATATCATCGTGGATAAAACTCTGTCCTCTCAGGCATCGTGGTTTATTTATGCTACTTATAGAGTTAGTAGATAATGCTCTAATGGGGACAGTAGTAAAAATGTTGCCATATCTTTTGAGTAGTATCGGAGTTCACGGTGCGTTCTTCTTCTATGGTAGCTCGTCTCTCCTCTTAACGTTGACTATATATTATTTTATCCCAGAAACTAAAGACAAGACTATCATTGAAATGAATAATATCATGAGCCGTTAG
- Protein Sequence
- MPRCKARERVAFGLEGWRALKLNMPIVEYTRSDDLAKSVELQNLRELNNEELRRQRSVAKKSTTAPQTSPAPTAKPENFTSRVVFYTPKLAVRPYKISANHVCSPNCKRTDVLGLKELRTYNPLAKPLLSGWERQSVKWKYDKRVMYRSPCGRRLRTMEELHRYLRTIQSDMGLDLFDFSPNTHCLAEFTINNTIISKKILVSSSVWSSFFMFGLCMGTPTIYITQTRLEANSTEVISNEISSWIKLCPLRHRGLFMLLIELVDNALMGTVVKMLPYLLSSIGVHGAFFFYGSSSLLLTLTIYYFIPETKDKTIIEMNNIMSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -