Hgla004156.1
Basic Information
- Insect
- Hebomoia glaucippe
- Gene Symbol
- Rfx2
- Assembly
- GCA_025727935.1
- Location
- JAOSYY010000016.1:9237528-9249395[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7e-38 7.4e-34 116.4 0.0 3 78 200 275 198 276 0.97 2 2 1.5 1.6e+04 -3.2 0.0 24 32 602 610 587 616 0.65
Sequence Information
- Coding Sequence
- ATGTCTGAAATGGGCTTAGAGAATGTGTTTTATCTTGAAAGCTTTGAGTGCGCGGGCGACGAGGTGCTTGTCGAGTCTTCGCCGCCCGCCTCCCCCGACATGGCGGCACAGCTTGCCCAACCCACACAGGGTACAAGTGGTGGCAGTACTTCACCGAGTGCTGTCAGGGAGCTGATTGTTATACCGGAGATACCGAATGGGATAAATATTCAACACGCTATACAACAGGTGTCAACATCCGTGGATGTGAACGGAGACAGTTCGGGTCATTCCAGTCCAAATAATGAGACTCAGCACACTTATATTGTAGCGAGCGAGGGCGGAAATGGCGTCAACTATCATGTGCAGTATGTCGAACCTGAAGAGATTTACACGCAAGGACCTCAGTCGCATATGGAAACATTACGGGCCTATCCTGTATTCGGAGTGGCGAACGTCGAATCAGTCGCTGACGCGTCCGCGAATATTGACGGTGATGCTTGGAGTGGTGAATTTACGTTCACCACTGCGGGTACAGACAGTGCCGGCACATCGGGTGCGGGCAGCTCAAGCAACGAGCAACCCACATCGCCCGCGCCTCCCGCGCGCATGCCACCCGCTACCGTGCAATGGCTGCTTGACCATTACGAGACTGCTGAAGGGGTGTCCCTCCCGCGCTCAACGCTATACGCGCACTACCTGCGCCACTGTAGTACGCATCGGCTGGAGCCGGTTAACGCAGCCTCCTTCGGCAAGCTTATCCGCTCTGTGTTTGTGGGTCTGCGCACGCGCCGCCTTGGCACGCGCGGCAACTCCAAGTACCATTACTATGGTATACGAGCCAAGCCCTCCGCGCCCAGGGACTCCCCAACATTCCAGAATAAACTCGATTTGGATGAACAGCAGGAACCCCGTGGCCGCGAACAGGAACAAGTGGTAGGTCTGAGTGGTGCAGCGCACCGGCAGTACCTGGGGGCCGTAGTGCCCCCAGAGCCACCCGAGCTGTTCATCGACGACATGCCTGAGGACGTCCCGCACAACGCTTTACACCTGCTCAAGGTTCATCACCGAGACCACGGAGTGGAATTCCTAGAAGCGGTTGCCGCTCTGGACACGTCCGCTGTGGAACGCGCTCGTCGTAACTTCTGGAAGCGTCCGCCTGGTGAGCTGTGCCGCCGCGTGCTGTTTAAACTGACGGCGCGTCGCGACGTTGCCATCTGGCTGCGTAAGGCTGAGTTGCAGCTGTATCAGCGTGCTGTTGAACTTTTGTTGCCCGATGTGCTGCGCCCGATACCCTCACAATTAACTCAAGCAATTCGCAACTTCGCCAAGACACTAGAGTCCGCTTTGGCCGGCGGGGCGAGCGGAGCGCCCGTTCTCGCCGTGCGAGCTCAGGGCTCGGCTGCCGCCGCGCTTGCAGGGGCACTGCGTAGATACACCTCGCTCAACCATCTGGCGCAGGCCGCACGCGCCGTGCTAACAAATCATCACCAGATACAGCAGATGGTGTCGGACTTGAGTCGCGTCGATTTCCGCGTAGTGCGCGAGCAGGCAGGATGGGCCTGCGCGTGCGGCAGCACTCCCGCCGCTCATAAGCTCGAAGCTGACTTCAAGGCCACGCTGGGGCGCGGTGCGTCGCTGGAACAGTGGGCAGGCTGGCTGGAAGCGTGCGTACGCGACGCGTTGGCTCCACACGCCGCGCGCCCAGACTATACAGCGCGCGCGCGCCGTTTGTTGCTCGACTGGTCCTTCTACTCGTCACTCGTCATCCGCGAGCTCACACTGCGGTCGGCTGCGTCGTTCGGCTCGTTCCACTTGATCAGGCTGTTGTACGACGAGTATGTGGCATTTCTGATTGAACGCCGTGTCGCCGCGCATCGCCGTGAACCGCCCATCGCTGTCATGCAGCGTGCCATGGACGATGATGATGAGTTACCAGAGGAGGCGCCTAGGGGCGAGGAAGAGGAAGGCGAGGAGGAAGATGGTGAGGGAAAATGGGAGTGGGGCGAAGAAGACGACGAAGACGACGACGACATTGACTGTAAGAAGGCGCGCCTCTCCGAATAG
- Protein Sequence
- MSEMGLENVFYLESFECAGDEVLVESSPPASPDMAAQLAQPTQGTSGGSTSPSAVRELIVIPEIPNGINIQHAIQQVSTSVDVNGDSSGHSSPNNETQHTYIVASEGGNGVNYHVQYVEPEEIYTQGPQSHMETLRAYPVFGVANVESVADASANIDGDAWSGEFTFTTAGTDSAGTSGAGSSSNEQPTSPAPPARMPPATVQWLLDHYETAEGVSLPRSTLYAHYLRHCSTHRLEPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKPSAPRDSPTFQNKLDLDEQQEPRGREQEQVVGLSGAAHRQYLGAVVPPEPPELFIDDMPEDVPHNALHLLKVHHRDHGVEFLEAVAALDTSAVERARRNFWKRPPGELCRRVLFKLTARRDVAIWLRKAELQLYQRAVELLLPDVLRPIPSQLTQAIRNFAKTLESALAGGASGAPVLAVRAQGSAAAALAGALRRYTSLNHLAQAARAVLTNHHQIQQMVSDLSRVDFRVVREQAGWACACGSTPAAHKLEADFKATLGRGASLEQWAGWLEACVRDALAPHAARPDYTARARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVAFLIERRVAAHRREPPIAVMQRAMDDDDELPEEAPRGEEEEGEEEDGEGKWEWGEEDDEDDDDIDCKKARLSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00878607; iTF_01202984; iTF_01203777; iTF_01202210; iTF_01204606; iTF_01205438; iTF_00430328; iTF_01206264; iTF_01561760; iTF_01193354; iTF_00358256;
- 90% Identity
- -
- 80% Identity
- -