Hnig006297.2
Basic Information
- Insect
- Hartigia nigra
- Gene Symbol
- -
- Assembly
- GCA_031001745.1
- Location
- JARPRG010000321.1:2706711-2710121[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.56 37 5.0 0.2 2 23 91 113 90 113 0.76 2 12 5.8 3.9e+02 1.8 0.1 5 23 418 437 417 437 0.83 3 12 1.8 1.2e+02 3.4 0.4 1 23 561 583 561 583 0.88 4 12 0.1 6.7 7.4 0.1 5 20 669 684 667 686 0.91 5 12 0.16 10 6.8 2.8 1 23 844 866 844 866 0.91 6 12 1 67 4.3 0.9 2 20 897 915 896 917 0.90 7 12 0.00034 0.023 15.2 0.8 1 23 931 954 931 954 0.97 8 12 0.0019 0.13 12.8 3.7 1 23 961 984 961 984 0.95 9 12 0.00012 0.0083 16.5 3.6 1 23 1013 1036 1013 1036 0.96 10 12 0.26 17 6.1 1.2 2 23 1041 1061 1040 1061 0.95 11 12 0.0039 0.26 11.8 2.4 2 23 1069 1091 1068 1091 0.91 12 12 0.016 1.1 9.9 0.2 2 23 1096 1118 1095 1118 0.93
Sequence Information
- Coding Sequence
- ATGGACAATTTTCAgcaatataaaacaaaatacaactTAAAGGAGCCACTTATTTTGTTGGAACGAtgtgataaaatattcaacacACCGGAGCTGATTAGGCGTTTAGATAACACCGCAGTTAATAGGAAAGACGATGCAGaaattgaagataaatattcttcgGATAAATCTATATCGCCATACATTAAGTATCAACCTTTGTTATGCAATGGTAACGGTCAACTtccatatttcaatttatctatAAAACAGTCAAAGTCGCTCATTCCATGTGAAATATGTGGGAAACAATTCTTAACTACCAGAAGCAAGAATGTTCATGCTATAAGACTTCACGGGGTCTCTTTAGTAGCTAAAACTCAACGCAAACGTAATACAAGTAGTAATCAAAGTTCTAAACATTTGGAGGATTCACAAAATGCCAAGATTTTTGATAAAACGAAAAGTACAACAACTCTAACAAAGAAGACggacaaaattgaaaataatgacgaTTCGTTACACGGTGTTAAAGCTACGTCAGAAATTACTGAACAAACATCGACAGCTGGAGACACAGGAATACACTCTAAtcagaataatgaaaataaaaatgaaatgaaagtaTCTAAAAGTCAGACAAGTTGCAAGAAGAAAACTGACGATAGAGCAACTGCAGTcaccaaaataaataatagggcgaagggaaataaaaagaacctAAAGCCATTGAACGCACTGAGTCTATTAAAGCATAAAGACAATAAGGTTATAACAAAGAGCGTTACAAGAACTCCAAAGAGCCCTGCAAAGTGTCTTAAAAGTAGTCCTCCCAAGAGTCCTGCGAAAAGTCCAAAAGCAAATCAGGGAACATGGTCAGTGTCTAATAGTCCTGCAagaaatctattaaaaaattttatgatttctagTCCTGAACAGACTCTTATGAGAAGGTGGCTCATGAGTGATCAAACTTCTAGCATATCAACATCAGAACCACTAATCAAAcgaatcaaaattgaaaaagatgatACAGAAATTCCTCTCAAAGTACAAGATGAAACCGAATCTGGAAGATGTACTCCTATAATGAATAACAAGATCAGTGAACGAATCAATAATTCTGAAACTTCATCGAACCATGAGGTTACAAGTACTGTAACCGATACCCCTGATAACAGTATCTCTAATAATTTGCCATTATCTGAACGTAATAAAACAGTTTTACGCCATAATGGTATGACAATGCTACCACCGCCGGCATACGTTATATGCACGTTGTGTGGCAACACGAgcgacaatataaaaaaacacaTCGTAGAATATCATAAGGTCACAGAACCATCTCTTTTAGTTCAAGAGTCTATTGCACAGTCGTATTTTGAAGACCTTATGGGATCCgctgacaaagagaaagatcaAACGTATAAATCAGACATTGAATCCAAGTCACAAGATAAAAGACGATcccaaaaaagaaagagacctAACACTTCCGAAACTGATGAGATTACAAAGGAAGAGAGTCGACCAAGTGCCAAGAAATCAAAACCAAATAAACCAAGTCCAGCATCTACGAAAATAAGTAACAAAACTACAAAAGACAACAATGATACACGATTGGAGAGGAAATCTTCAACGGAGAGCaattcaaagaagaagaaaagaagtgaGAAGAAAGCTAAtgcatatacagtatataactGTAATATATGTCAAAGGATAATTCATGGCAAATATCGTTTGGAGGTTCACGAAGAAGCACATACAAGACGTGGTGAGAcattggaaaatttaaaagattctACTGAGAAATCATCTCACAAATCAAATCGAAAGTCCAAGAAGCAGAACGGAGCTAAATCCTTAGAGCCCATGACTCACAATACAACTGAGTTGAATGGAGTCGATGAATCTGTTAAACAAGCAAGTACAAAGAAGGGAAAGAGCTCGAAACAGTCAAAGGTCAAACAAAAGATACAAGAGGAACCTCGTCATAGTGAATATTTCCTTAGTAAATGTACATgtggaaaatcattttcaagtGTGACAGCATTGGAGGAGCATAAGATATATTGTGACTCCAATAACAGAGAATCTGATGCAAATCAGTCCATTGAATCTCCTACTGGAAGAGTATCAAGCCATGGCTTAAGTCtcacgataaaaaagaaaaataattcgtatGAAATAGTTCATAAGGATATTGTTGACGAGGAGATGTCCAATGTTTCCAGTTATACTAAGACAGATGAATTATCATCTACGATCTCCGTAACGAGTTCAGAAAATGCAGCCATAGAAAATTCGCCGACTATTAAGAAAGAAGTAATGGATTTCGAAGAAGATcagaataatttgaataattttccaaattttttgttgaatATGGAAATGCCAAAAGAAGACAACAATAATATTCCAATAGGCGCGATTGAAAAGAACCAAGAGGACACTGAGAAAAGGCCAGCAGATCTTAAAACCCTTCGGCTAGTTGGCGAAGACACTCTGAGCAGTGAAAATATAACCTCACAAATTGTGAATGATCATAGGTGCATCTTGTGTGAGAAATTCTTCTCTAGTAAATCTAAAATCATGAAACACTGGTCAGAACACGTTCTAGAGATGTTATGCGATTGCGAAGAGAATATCCTAAACATGCAAGAGTACGAAGATCACATTCACAAAATTCATCCAAAGATTGTGACATGTGGATATTGtgcaaaaaaatttgaaactcTGTTTGACTTTGGTGAACATCGATGTGACGTTACTAAAGGAAAACCCTTAGACAGTTTGCAATCGCTGTACCCTTGCTTAAAGTGCAACAAAAACTTCAGGCAGGGCACCTACTTGGATCGTCATATTCAGAGTATTCACCCAAATGTTGTAAACCTTTTTCAATGCTATAATTGTTCACAGCGGTTTTCTACCaaagacgagagaaaaaaacacaTGACAGAATTTCACGTGAAGAATAAATGTAGTATCTGTTACAAACTGTGTACTCATAAATTGAAGAACAAGCACGAGTCTTATCATCATGGATTGGGCTTCCCTTGTCACGTGTGTAAGAAGGCTTACTCGAACAAAGAGTCCTTTACGCATCATGTAATGGTTACGCATATAAGTAAGATAGAATGTGTTATatgtaaaaagattttaaaggCGTCTTCCTTCAAGAAACATTTCAAACGTCACCAGAATGAGGATGGTTTGTTGCAATGTATATTGTGCAAAAGGACCTTCTCTACTAAcgaggaattaattaatcatcacatgaaaaaacataattttgaGAAGTCCTGTGAAATCTGtggaatgaattttcttacaaAGTCCAGCGTGCAACAGCATATTGCCAATGTGCATTCGAACgtatatgaaaatagaaacatCGTTAAAGAAGAGGTGACGCTTGAAAGTTAa
- Protein Sequence
- MDNFQQYKTKYNLKEPLILLERCDKIFNTPELIRRLDNTAVNRKDDAEIEDKYSSDKSISPYIKYQPLLCNGNGQLPYFNLSIKQSKSLIPCEICGKQFLTTRSKNVHAIRLHGVSLVAKTQRKRNTSSNQSSKHLEDSQNAKIFDKTKSTTTLTKKTDKIENNDDSLHGVKATSEITEQTSTAGDTGIHSNQNNENKNEMKVSKSQTSCKKKTDDRATAVTKINNRAKGNKKNLKPLNALSLLKHKDNKVITKSVTRTPKSPAKCLKSSPPKSPAKSPKANQGTWSVSNSPARNLLKNFMISSPEQTLMRRWLMSDQTSSISTSEPLIKRIKIEKDDTEIPLKVQDETESGRCTPIMNNKISERINNSETSSNHEVTSTVTDTPDNSISNNLPLSERNKTVLRHNGMTMLPPPAYVICTLCGNTSDNIKKHIVEYHKVTEPSLLVQESIAQSYFEDLMGSADKEKDQTYKSDIESKSQDKRRSQKRKRPNTSETDEITKEESRPSAKKSKPNKPSPASTKISNKTTKDNNDTRLERKSSTESNSKKKKRSEKKANAYTVYNCNICQRIIHGKYRLEVHEEAHTRRGETLENLKDSTEKSSHKSNRKSKKQNGAKSLEPMTHNTTELNGVDESVKQASTKKGKSSKQSKVKQKIQEEPRHSEYFLSKCTCGKSFSSVTALEEHKIYCDSNNRESDANQSIESPTGRVSSHGLSLTIKKKNNSYEIVHKDIVDEEMSNVSSYTKTDELSSTISVTSSENAAIENSPTIKKEVMDFEEDQNNLNNFPNFLLNMEMPKEDNNNIPIGAIEKNQEDTEKRPADLKTLRLVGEDTLSSENITSQIVNDHRCILCEKFFSSKSKIMKHWSEHVLEMLCDCEENILNMQEYEDHIHKIHPKIVTCGYCAKKFETLFDFGEHRCDVTKGKPLDSLQSLYPCLKCNKNFRQGTYLDRHIQSIHPNVVNLFQCYNCSQRFSTKDERKKHMTEFHVKNKCSICYKLCTHKLKNKHESYHHGLGFPCHVCKKAYSNKESFTHHVMVTHISKIECVICKKILKASSFKKHFKRHQNEDGLLQCILCKRTFSTNEELINHHMKKHNFEKSCEICGMNFLTKSSVQQHIANVHSNVYENRNIVKEEVTLES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01199742;
- 90% Identity
- iTF_01199742; iTF_01199003;
- 80% Identity
- -