Hnig001621.1
Basic Information
- Insect
- Hartigia nigra
- Gene Symbol
- -
- Assembly
- GCA_031001745.1
- Location
- JARPRG010000084.1:455312-459871[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-11 2e-08 33.8 0.0 2 35 104 138 103 144 0.91
Sequence Information
- Coding Sequence
- ATGCCGCACGCCTTCCTTGGCTCGACGGCCATCTTGAGATTGAGGCTGGAAGCCAGAGAAGGATCCAGACTGGATAGAAATGAAGTTGAAATAAAGGCAAGAAAGAATGGTCGGCGCGTCGTGCAGTTTAACCGCGGACATTCACGGCCGAGGAAATGCAAACGTCTCGTGAAAAATTCAGCTTCGGAACGTGCAGGAGTGTGGCGGgCCAAGTTGTTGGAATCTTCTCACGCTTGGCTCGGAGCCTCCACTTCCAGTATAGCCGCTGACTATTCGAGCCTGCTGAAGCTGAAGGCGCCGACGTGGACGCGACACGATCTTAAGGAGGCGATCGAGGCTGTGGTCACGCAGAAGATGCGCTTCACGCAAGCATCGAGCAAGTACGGCATCCCCAAAGGCACCCTCTACGACAACATACTCGGCAAGTCCAAGAGGATGATGGTCCTCGAGGAGGCTGCCCTCAACTCCAGCGAGGAGGCCTCGGTACTCGAGTTCTGCTGCGACATCAGCGTCAGTCCTTACAATCGTCGCACCAAGAAGTCTCTGAACGCGATACTCAACTTTGTTGAGAAGCTCAGGCGAAAGCGCGATCCTGGCTTCGTCTTCACGGGACTCTCGGGTTTTCGATGGTGGTGGGCATTCTGCAAGAAGCACTCCATAGTATCCTTGTATTTTAATGACGAGAACGAGAACGAATGA
- Protein Sequence
- MPHAFLGSTAILRLRLEAREGSRLDRNEVEIKARKNGRRVVQFNRGHSRPRKCKRLVKNSASERAGVWRAKLLESSHAWLGASTSSIAADYSSLLKLKAPTWTRHDLKEAIEAVVTQKMRFTQASSKYGIPKGTLYDNILGKSKRMMVLEEAALNSSEEASVLEFCCDISVSPYNRRTKKSLNAILNFVEKLRRKRDPGFVFTGLSGFRWWWAFCKKHSIVSLYFNDENENE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00294387; iTF_01417626; iTF_01198587; iTF_01199325; iTF_00982890; iTF_00220502;
- 90% Identity
- iTF_01198587; iTF_01199325;
- 80% Identity
- iTF_01198587;