Bhor020559.1
Basic Information
- Insect
- Bombus hortorum
- Gene Symbol
- -
- Assembly
- GCA_905332935.1
- Location
- HG995188.1:6233816-6238148[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.1e-12 9.9e-09 35.0 0.0 2 35 82 116 81 124 0.89
Sequence Information
- Coding Sequence
- ATGGACGCAGGAGGAGTGAGAGAAAGGACGGTGGATTTGGAGTTTGATAGAGGCGCGTATCAAACGAGGAGCGTAGCCCTTCGACCCTTAAAAATTCATTTGGGAAGTCAGCCGAGTGGTGTGGCTCCTGCAAGTGATTCGGCCAAGTTGTTGGAGTCGTCCCACGCTTGGCTCGGAGCCTCCACGTCCAGTATAGCAGCTGACTATTCCACCCTGCTGAAGCTGAAGGCGCCCACGTGGACGCGGCACGATCTCCAGGAAGCGATCGAGGCTGTGGTTACTCAGAAGATGCGCTTCACCCAGGCGTCCACGAAATACGGAATACCGAAAGGCACATTGTACGACAACATCCTGGGAAAGACGAAGAGAATGATGGTCCTGGAGGAAGCGGGTCTGAACTCGAGCGAGGAAACGGCCGTGCTCGAATTCTGCTGCGACATCAGCGTCAGTCCGTACAATCGTCGGACGAAAAAGTCGCTGAACGCGATCCTCAACTTCGTGGAAAAGCTGAGGCGAAAACGCGACCCTAACTTTGTGTTTAACGGTCTCTCTGGTTTCCGTTGGTGGTGGGCTTTCTGTAAAAAGCACTCGATAGTATCGCTTTACTTCAACGACGAGAACGAAAACGATCAGTAA
- Protein Sequence
- MDAGGVRERTVDLEFDRGAYQTRSVALRPLKIHLGSQPSGVAPASDSAKLLESSHAWLGASTSSIAADYSTLLKLKAPTWTRHDLQEAIEAVVTQKMRFTQASTKYGIPKGTLYDNILGKTKRMMVLEEAGLNSSEETAVLEFCCDISVSPYNRRTKKSLNAILNFVEKLRRKRDPNFVFNGLSGFRWWWAFCKKHSIVSLYFNDENENDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00770292;
- 90% Identity
- iTF_01066864; iTF_00183865;
- 80% Identity
- -