Hruf059827.1
Basic Information
- Insect
- Harpalus rufipes
- Gene Symbol
- -
- Assembly
- GCA_951394225.1
- Location
- OX596290.1:22402966-22404441[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.002 19 7.3 0.1 26 50 85 108 68 112 0.83 2 8 0.018 1.8e+02 4.2 0.1 22 45 112 134 108 142 0.76 3 8 0.00028 2.7 10.0 0.5 20 45 199 224 187 230 0.87 4 8 0.011 1e+02 5.0 0.0 26 45 239 258 229 266 0.88 5 8 0.026 2.5e+02 3.7 0.1 27 44 296 313 290 323 0.88 6 8 0.00081 7.8 8.6 0.0 23 46 327 350 317 358 0.84 7 8 0.38 3.7e+03 0.0 0.1 26 45 363 382 350 386 0.81 8 8 0.068 6.6e+02 2.4 0.2 24 45 393 413 381 419 0.72
Sequence Information
- Coding Sequence
- ATGGACAGCAATTTACTCGGAGAAGCAAGCGAGGATGCGCAGAGGATGAGGAACACCATTCCGCATGCGTCAACTGATTCTGAAGATACAGACAACGCTGACAAAATGGTCGCCAGTACCTCGGGTGAAAGATCAAACAATATTGTGCaagaagaatataataaaaagttcGAAGAAGTTTATATTAAACAGGAATATTCTACAGATTCTGATAGTAGTAATGTTTCATCAAAAGTCGAAACTACAAGGTTTGAGTGCTCTATATGTCCCGCATATTTTGCAGATAGTCCAAATTTGATACGACACATGAGAACTCATTTTATTGAGTCTGGTGAAAAGAAACTAGAATGTCCAATATGTAGCAGATTTGTGGATCGTACAAATttgcacaaacatttaaaaaaacatgttGGTATCAAAGATTTTCATTGTCATTTGTGTGAAAAATCATTTACAGAAAAAGCTAGTTTGGAATATCATATTAAAATACACAATGGACAAAAGGATTTTCAATGTTTAACCTgcaataaaacatttttgacgAATAAAAATCTCAGTAATCACATGAAAACGCACAGTGAGCAGAAGATGAAACATTCTAAAAAAACTTATACATgctcaatttgtaataaaatttctacaaataataGCAACATGAGGAGACATATTAGAACGCATGATGCAAGTTATAAACAACTACCCAAAAAAACTtacaaatgtacaatttgcaacAAAATTGCTACTGATAGTAGTAATATGAAAAAACATATGAAGAAACATTCCGGTATTAGAGATTTCCATTGCAGTCAAtgtgataaatattttacagaaaaggCCAGTTTGGACTACCACATGAAAATACATAGTGGTCGTCGTGATTTTCGTTGCGAAATATGTAGCAAAACATTCATAACCAATAGAAATCTCAACAAACACTTGCTAACCCACagcgaattaaaaaataaaccaaTATCTACAAAAACTTTTCAATGTCCTGTATGTAATAAAGTCTCTACAGACAACAGCAACATGAAACGACATGTCCAGACCCACAAAGATACCAAAGAAAAACCAAAAAAGATTTATCAATGCCATATTTGCGACAAAATATCAATTGATTGTAGTAATATGAAAAAGCATATCAAAACACATACGAAAAATGAATCAGATGACAAGAAAGTACAATGCGAAATTTGTAATAAGTTTGTGGTTTGTTCTaatttaagtagacatttaaaaaagCACACCGACGTAGAAAATGCCAGCCTAATAAAAGAAAAGAGTGATGGAAACTTTGAAGAACtgtatattaaagaagaaccaaAGGAATACGTTTCTATTGATTGTGAAGATTACAGTGATAAACACAACGaagatattataataaaagaagAATCTCTGGAAGCAAACTCCAATGAccgtatattttataataatatagttgAAACCGTAACAAAAGACGATaatcaaatataa
- Protein Sequence
- MDSNLLGEASEDAQRMRNTIPHASTDSEDTDNADKMVASTSGERSNNIVQEEYNKKFEEVYIKQEYSTDSDSSNVSSKVETTRFECSICPAYFADSPNLIRHMRTHFIESGEKKLECPICSRFVDRTNLHKHLKKHVGIKDFHCHLCEKSFTEKASLEYHIKIHNGQKDFQCLTCNKTFLTNKNLSNHMKTHSEQKMKHSKKTYTCSICNKISTNNSNMRRHIRTHDASYKQLPKKTYKCTICNKIATDSSNMKKHMKKHSGIRDFHCSQCDKYFTEKASLDYHMKIHSGRRDFRCEICSKTFITNRNLNKHLLTHSELKNKPISTKTFQCPVCNKVSTDNSNMKRHVQTHKDTKEKPKKIYQCHICDKISIDCSNMKKHIKTHTKNESDDKKVQCEICNKFVVCSNLSRHLKKHTDVENASLIKEKSDGNFEELYIKEEPKEYVSIDCEDYSDKHNEDIIIKEESLEANSNDRIFYNNIVETVTKDDNQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00769030;
- 90% Identity
- iTF_00769030;
- 80% Identity
- iTF_00769030;