Basic Information

Insect: Harpalus rufipes
Gene Symbol: -
Assembly: GCA_951394225.1
Location: OX596286.1:27795483-27805790[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.4 88 5.7 4.8 1 23 97 120 97 120 0.98

2 20 0.0087 1.9 10.9 2.5 2 23 184 206 183 206 0.94

3 20 0.017 3.6 10.0 0.8 2 23 240 261 239 261 0.97

4 20 7.9 1.7e+03 1.6 1.2 1 23 267 289 267 290 0.94

5 20 0.72 1.6e+02 4.9 4.7 2 21 639 658 638 659 0.94

6 20 10 2.2e+03 1.3 1.5 1 23 782 804 782 804 0.78

7 20 3.8 8.2e+02 2.6 0.8 1 23 956 978 956 978 0.89

8 20 0.016 3.5 10.1 0.4 1 23 1064 1086 1064 1086 0.98

9 20 0.022 4.8 9.7 0.8 2 23 1095 1116 1094 1116 0.97

10 20 0.074 16 8.0 2.1 1 23 1145 1167 1145 1167 0.96

11 20 0.003 0.65 12.4 5.8 1 23 1174 1196 1174 1196 0.99

12 20 0.57 1.2e+02 5.2 1.5 1 23 1265 1287 1265 1287 0.98

13 20 0.026 5.8 9.4 1.8 1 23 1300 1322 1300 1322 0.97

14 20 1.8 4e+02 3.6 3.8 1 23 1395 1417 1395 1417 0.96

15 20 0.018 4 9.9 1.8 1 23 1423 1445 1423 1445 0.98

16 20 0.059 13 8.3 0.4 1 23 1518 1540 1518 1540 0.96

17 20 3.2e-06 0.00069 21.8 1.2 1 23 1546 1568 1546 1568 0.99

18 20 0.0063 1.4 11.4 2.6 1 23 1654 1676 1654 1676 0.97

19 20 0.00019 0.041 16.2 1.3 1 23 1682 1704 1682 1704 0.99

20 20 0.0022 0.48 12.8 2.9 1 23 1823 1845 1823 1845 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.4	88	5.7	4.8	1	23	97	120	97	120	0.98
2	20	0.0087	1.9	10.9	2.5	2	23	184	206	183	206	0.94
3	20	0.017	3.6	10.0	0.8	2	23	240	261	239	261	0.97
4	20	7.9	1.7e+03	1.6	1.2	1	23	267	289	267	290	0.94
5	20	0.72	1.6e+02	4.9	4.7	2	21	639	658	638	659	0.94
6	20	10	2.2e+03	1.3	1.5	1	23	782	804	782	804	0.78
7	20	3.8	8.2e+02	2.6	0.8	1	23	956	978	956	978	0.89
8	20	0.016	3.5	10.1	0.4	1	23	1064	1086	1064	1086	0.98
9	20	0.022	4.8	9.7	0.8	2	23	1095	1116	1094	1116	0.97
10	20	0.074	16	8.0	2.1	1	23	1145	1167	1145	1167	0.96
11	20	0.003	0.65	12.4	5.8	1	23	1174	1196	1174	1196	0.99
12	20	0.57	1.2e+02	5.2	1.5	1	23	1265	1287	1265	1287	0.98
13	20	0.026	5.8	9.4	1.8	1	23	1300	1322	1300	1322	0.97
14	20	1.8	4e+02	3.6	3.8	1	23	1395	1417	1395	1417	0.96
15	20	0.018	4	9.9	1.8	1	23	1423	1445	1423	1445	0.98
16	20	0.059	13	8.3	0.4	1	23	1518	1540	1518	1540	0.96
17	20	3.2e-06	0.00069	21.8	1.2	1	23	1546	1568	1546	1568	0.99
18	20	0.0063	1.4	11.4	2.6	1	23	1654	1676	1654	1676	0.97
19	20	0.00019	0.041	16.2	1.3	1	23	1682	1704	1682	1704	0.99
20	20	0.0022	0.48	12.8	2.9	1	23	1823	1845	1823	1845	0.98

Sequence Information

Coding Sequence: ATGACTTCACCGTCGATGGTACATCGATCGGGAGACACGTTAGTAGTGCGGAGCGTTGTCAGCGGTAATCAGTTGTTTGTAGACGACAACGAAGCAGAGCGGTACTCCGAGGACGCGTCGGAAGATATCGATTATTGTGACGAGTTATTCGATCCCGACGATAACAAAAATTTACCAGAGTGCAAAATCAGACGGAATTACTCATGCGTCAGCTGTCACTTCTTTACGCAAAATCCGAGACATTACTTGTATCACTTGCGGGATGTGCATAAAGAGAAAGTGAAAATATACGAGTGCTTAAACTGTTTGTACGCgtcaaaacattttcaaaagttGCATCGCCACATGAGGATGGTACACAGCAACCTAGAGAATGCAGATGGTGTGGACCCTGCCCTGCGACATAAGGTGCGGCGAAAGCGGAAGCGACCTTCGAACGAGGAGGTAGGGGAACCGGAACTCAGCGCTGAGGAACTAGAGCCTGATGAAGAAGATCTCCACCGAGGTGACATCATGGATGACGTAGTTTCTAAAACTTCGTCTGACTTGAAGTGTTCATTGTGTCCATTTACTACCAAGCATCAGGGACAACTAACGAAACATGAGAAACAAGAACATATTAAGACAAAGTTCTTCCGGTGTTCGAAGTGCAGTTACGTGACTCACATCAAAGCGCGATTCACGAAGCACGTCAAGTACCATTCCATGCCTATGATCAAGTGTGACTTGTGTGATTTCCGTACGCCTTACAAGTGGAACTTGGACCGGCATTACAAGAACCACAACGGGCACGGTGCGTTTCGGTGTTCTGCGTGCAACTTTACAGCGGATATCAAGCAGAGCCTGACGGTGCATGAGATGAATCATCATGTTCCTCCCGTGGGACAGGCAGCCGGATTAGGGGTGGGTCGACGCCGCAACAAAGTGGGCGCCAGCGACACCACAGCGGCCGAAGAGGCGGCCGCTGCCGCGGCGGCGCAGGCAGCCGCAACAACAGCCGAAACACCCGCCAACGTTGCCCCACCTAAGGATTTCTCACAGGTTCATACGccagaaaaacaagaaattgtcAACGAAGTAAACAAAAAAGGCCCCAAAGTTAAATTTACTTATAATAAGAAAGCGAAAACTACAAATACACAAGAACAGAATGAAAGGCATAATTTCGAAACAGATTTTATTCATCCTGATGACATAATTCATCATTCCAATGGCAACATTTATATAAAGAACAAGTGCAAGTTGTGCAATTACAAAACTGCTTGGGATACCGAGATGGCCCGACACGAGCAGAAAGTTCACAACATACTGCGAGACAATGGCCAACAAAACAACGTTGCCGTGAAGAAAACTCCACGGCCAATCCCTAATTTGATTCCGATACAGAGCTCGCAGTCGTCGCAGGCGATGTCTGCCAGCTCGCTGTTGAAAATTCCTCACGTCCAAAATAGACCAGCCGGCGTTCACGGCCAGTTCCTTCCAAAGGCGGACGAATACTTAGCTCCAACCGACGTCATGTCCCAGAAAGATCTAAACGATATGTGTGCCAAATCTGCTAACAGCTCCCTACGCGACTTTGCTTCACTGTTCGGCGATGACGTCGTTTTCGGGAATGAGAAGTCCGCTGTAGCTCCCGTTTCTGATGCGCCAGAACTAAAAACATCGATTGCTTTACCTTCGCCTTTACCTAATGCAGTATCCGTGAACACCGCGCTCTTCAAGAAAAAGAACGCGTCGTTCTTCGACAAACTTAAAGAGAAATTGATGACAGGAGAGAGTTGCAATCTCACTTGCAAGTGGTGCGGGCATGAATCCAAGTGCCTTTCGGAGTCGGCAGGTCACCAGAAAACCTGCGGAAAGCAGCAGATCAACATCAGCAGTTCACCCGCGGCTGCAGCTACCACCAGTTCGACCAGGTGTCAACATTGCAGACAAAGATGCAAGTCCAGTATCGATCTGCATAATCATTTACAGGTGTGCACGGAGGCTAACAAACATTTACACAAGGACATACCCAGATTAAACTATGAAAAACCGgatattacaattaaattagAAGATGAACATCATACAGAAGATTCCCTTGAGCCACATCCAATGGAAAATGTCGTTTTTGTTTGGAATAACATAACTCCTTCTCCTCAGCCTCCTGATGTTGAAGAACCAAATTTATCCTCAGAGCGAATAGAGGATAATAGCATAGATCTTTCAATCCGAGTGCAATCCCCAGAAAGCGAAGGTAGCTTTATGGAAACCGAGCCCGTTAATGGAAGTACCCCAGGGCCAGTAAAAATGCCAACACATGGCAACAATATCGATATGGTTGCTGAAGGTCGAAGAGTTTTTAAATGTCCTCATTGTTCATTCTGGGCTACAACTGCTTCTCGTTTTCATGTCCATATCGTTGGCCATCTAAACAAAAAACCATTTGAATGCTCCTTATGCGCATACAGATCCAACTGGCGATGGGATATCACCAAACACATTCGCTTAAAATCAGTAAGAGATCCCGCTCACGAGAAAGCGCGCGTGTTGATGACTGATGAAACCGGAAGAAGAAACTATTCAAAGTACAACAAGTATTTGACACAGTTACGACCGAATGATTCGCCTCAGGAAAGTAATAGTTCTGGACGGAGATCCAAGACGAATTTTGAAGCGAATCAGCGCAACGCTTCACCTGAAAATGTGAAATCGGTGATGGAGTTACCAAAATTGACCCGGGCGCCAACTAACTCTGATTTTCAAACTGCAACTGGGAATAATCCTCTTCGACCACCACCACCCTTAAAAGCTGCTAATGAAATGTTTTACCAAAGCGAGCAGAAGAAACGGAGAACCAGTTCGGATTCGAAGAAGACCCTCTTCAAATGCAAGAAATGCAATTTtagagaTGCGAACCGCGACAACATTTTGCTGCATGTGAAAGGCCACTATCGTGAAGAGAACATCGTAGCCGGTAATTCAGAAATTGATGAGGCAAGTGTCTCTAGGGGCCAGGCCCCATTTCGTTGTGGCCATTGCCACCAGGTATCAAACTGGAAGCATGTTATTCAGCGCCATTGTCGCCTGAAACATAGTGGAGACGTCCGTGTAGTAATCGGCGGAAAAAATGGAGCCTCCGATAAAATAGAAATCGACGACCAAACGGACGAACCAGACCATTTGGACGTCATCCAAAGCGGCGTTTTCAAATGCAAGCAATGCCCGTATTCCACAAATGTTGAAATCGAATTCAACGACCATATGGACATGCACATTCCAAAAAACACCACAACTGTCAAATGCTACTTTTGCCCCTATTTCGTCACACAAAAATTCGAACTCTTCGACCATCTCCGACTTCACGGCGTCACCAATCCCGAAGATTACGTGAACCGGGCCATGCAAGGGAGAGAAATTGCATCACCGACAGATGGATTATATAAGAGATACAAATGTGTTATGTGTCCTTATGTTAGTAATAGTAAATCACAATTTTTATACCATAAACAGTTCCACAGACATCGAGGGGGATCGTTTAAATGCGAATACTGCAGTTATAATGTCAGTAGACGACACTTATTGCACCAGCATATGAAAGTACACGGAATCAACATTCCCACGCCGAAAGGTTCATTTAAAAGTGGATCAGATAGAGAAAGCGATGCAATGGATTCCGAAGATTTTGGAATGGACGAATTTGAAGAGGTTATGTCACCGATTGATACTCCAATTTTATCTTTAGAAGAACAAATTCCTGCAGATGTGCCATTAGTTTGGGTATCAAGAGACGGCAAATTTTCCAAAATGTATAAATGTCGGTACTGCCCTCATGTTAACGTACGAAAAGTTAATATTCAAGAACATGAGAAAATGCATTCAAGAGATCCAAATATTCCCAGAAATGGTGACGAGCACTCTTGTAACGAATGTTCTTATGTTTGTAACAACGCTGGTGTCCTTTCGTcacatttaaaagtacatcaaaATATTCAAGGCCAAATTCATTGTTTAGTTGATACAGAAAAAACTGACGAAGAACAAATATCAGAACTTAGTAGATTATTAAATGTAACTCCTCCAGAAACAAACTATTTGAGCGATGCAACAGATAGtacaaaaatagaagaaataaacGGAATTGAAGATGAAAAAAACGTATTAGACTTCACAATTTCCGACGATTTAGATaagatgttatttttttgtgaacACTGCCCGGCAAGATTTTTACACGAAAAAGAATATAACATTCACATAAAATTCCATGGAATTCGGTTATTCTATCGTTGTGATTACTGTACTTATGCTGCAAGACAAAAACCGCATCTTTTGTCGCATAATAAAGTTCATACGGATGAATACcaagaaaaaactaaaatttaccAAACTGAATATCCGATTAGTGCTGATCACCAACCACCAAGAACTGCTGTTATTGTAGATGCACCAGGAAATAACAACGGTTCAATTTGGGTCGTAATCGCAACGGGAGACAGAAAATGTATTTCTGATAATGAAATTTCAGTTGTTAAACTTGAGCCAAATAGTAGAAACAGCAATAAAAATTTTGCTTGTGAGAAGTGCCCAGCGAGATTTTTTAAAGACGAGTTACTGCAGTATCATATGACACTGCACGGATGTAAAAATccttacaaatgtaaattttgtgattatGCTGCAAGAACAAgcagtaatttacaaaaacatatacGAATCCACGAACAAGATAGACAGGAATTTATACCAACACCTATTCCCAAAATCACAAATCCAGCAACAATTATTCCTCTATCGGGAACTGATTTATTTCAGCAAAAATCCGAAgctgaaaaattaaattcggaaaatattcaaaatgaagtGTTACCAGAAATACCAATGCATGTAGACCAAGAATTTGGGACGTTATCAAACGGAAACCCAAAGTTTATTTATCCTACATATCTGAAAAATGGTCGAATGAAAGAGAAGAGGTATAAATGCCATAAATGTCCGTCAGCATTTGAAAAACGAGAACAGTACAAAGTTCATTTATCGTTGCACGGGTCTAAACAAAGGTACAAATGCGAAAACTGTGATTATTCGGTTAAATATTACGCAAACTATATTCAACATATTCGGAAACATCAGGTGAATGAAGACGCTCTGGCCGCCAGAAAATCAGAAATGGAAGATGAAGACGAGGACGAACCTACTGTAGAAATATCAGAAAATGTTGTATCTTCTCCTTTTAGTAAGCTTGcaatcaaaacattaaattcatCTTCAAAAAGAGGACCATTAAAGTTATCTGTAGCTGACAGACAAACATTGATGATACTACAACAGCGCAGAACAAGCAACGCAAGCAGTACAAAAGAATCAAcaacagaagaaaaaaaatctttctggtGCCCGCATTGTCCGTATACGAACCACCGAAGAGACGCAGTCGACAACCATGTAAATAGACACATTTGCGTTTCGGGTGTGCGTAGTAACTATACCTGTGATCATTGTGATTACACCGTTCCTCAGTCACATTTCCTGCGCGAACACGTTAAAATACATTTCGCAGGACAGAAGAGCCATCAACCAGAAGGTTTTATGATTTGCAACAATTTACAGTTGGCAACAAAAGAAGTTGATGACTCCGAAAATGTAAATAGTGATGAAAGTGTCATATTCCAAGATTGTGGTGATTCTAAGTCGGACCAAACGAGGTTTAGGCCTACGTTAGAGTCAGATCTAACTGCtgtgaataataataatgatgaaaaaatatatgttaaccCAGAGAATGGCGAATTTTTAGATAAAGATAGTGGTAAATCTGATACCAAAGAATCCAAAAAGTCACTTTAG
Protein Sequence: MTSPSMVHRSGDTLVVRSVVSGNQLFVDDNEAERYSEDASEDIDYCDELFDPDDNKNLPECKIRRNYSCVSCHFFTQNPRHYLYHLRDVHKEKVKIYECLNCLYASKHFQKLHRHMRMVHSNLENADGVDPALRHKVRRKRKRPSNEEVGEPELSAEELEPDEEDLHRGDIMDDVVSKTSSDLKCSLCPFTTKHQGQLTKHEKQEHIKTKFFRCSKCSYVTHIKARFTKHVKYHSMPMIKCDLCDFRTPYKWNLDRHYKNHNGHGAFRCSACNFTADIKQSLTVHEMNHHVPPVGQAAGLGVGRRRNKVGASDTTAAEEAAAAAAAQAAATTAETPANVAPPKDFSQVHTPEKQEIVNEVNKKGPKVKFTYNKKAKTTNTQEQNERHNFETDFIHPDDIIHHSNGNIYIKNKCKLCNYKTAWDTEMARHEQKVHNILRDNGQQNNVAVKKTPRPIPNLIPIQSSQSSQAMSASSLLKIPHVQNRPAGVHGQFLPKADEYLAPTDVMSQKDLNDMCAKSANSSLRDFASLFGDDVVFGNEKSAVAPVSDAPELKTSIALPSPLPNAVSVNTALFKKKNASFFDKLKEKLMTGESCNLTCKWCGHESKCLSESAGHQKTCGKQQINISSSPAAAATTSSTRCQHCRQRCKSSIDLHNHLQVCTEANKHLHKDIPRLNYEKPDITIKLEDEHHTEDSLEPHPMENVVFVWNNITPSPQPPDVEEPNLSSERIEDNSIDLSIRVQSPESEGSFMETEPVNGSTPGPVKMPTHGNNIDMVAEGRRVFKCPHCSFWATTASRFHVHIVGHLNKKPFECSLCAYRSNWRWDITKHIRLKSVRDPAHEKARVLMTDETGRRNYSKYNKYLTQLRPNDSPQESNSSGRRSKTNFEANQRNASPENVKSVMELPKLTRAPTNSDFQTATGNNPLRPPPPLKAANEMFYQSEQKKRRTSSDSKKTLFKCKKCNFRDANRDNILLHVKGHYREENIVAGNSEIDEASVSRGQAPFRCGHCHQVSNWKHVIQRHCRLKHSGDVRVVIGGKNGASDKIEIDDQTDEPDHLDVIQSGVFKCKQCPYSTNVEIEFNDHMDMHIPKNTTTVKCYFCPYFVTQKFELFDHLRLHGVTNPEDYVNRAMQGREIASPTDGLYKRYKCVMCPYVSNSKSQFLYHKQFHRHRGGSFKCEYCSYNVSRRHLLHQHMKVHGINIPTPKGSFKSGSDRESDAMDSEDFGMDEFEEVMSPIDTPILSLEEQIPADVPLVWVSRDGKFSKMYKCRYCPHVNVRKVNIQEHEKMHSRDPNIPRNGDEHSCNECSYVCNNAGVLSSHLKVHQNIQGQIHCLVDTEKTDEEQISELSRLLNVTPPETNYLSDATDSTKIEEINGIEDEKNVLDFTISDDLDKMLFFCEHCPARFLHEKEYNIHIKFHGIRLFYRCDYCTYAARQKPHLLSHNKVHTDEYQEKTKIYQTEYPISADHQPPRTAVIVDAPGNNNGSIWVVIATGDRKCISDNEISVVKLEPNSRNSNKNFACEKCPARFFKDELLQYHMTLHGCKNPYKCKFCDYAARTSSNLQKHIRIHEQDRQEFIPTPIPKITNPATIIPLSGTDLFQQKSEAEKLNSENIQNEVLPEIPMHVDQEFGTLSNGNPKFIYPTYLKNGRMKEKRYKCHKCPSAFEKREQYKVHLSLHGSKQRYKCENCDYSVKYYANYIQHIRKHQVNEDALAARKSEMEDEDEDEPTVEISENVVSSPFSKLAIKTLNSSSKRGPLKLSVADRQTLMILQQRRTSNASSTKESTTEEKKSFWCPHCPYTNHRRDAVDNHVNRHICVSGVRSNYTCDHCDYTVPQSHFLREHVKIHFAGQKSHQPEGFMICNNLQLATKEVDDSENVNSDESVIFQDCGDSKSDQTRFRPTLESDLTAVNNNNDEKIYVNPENGEFLDKDSGKSDTKESKKSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00767745;
90% Identity: iTF_00767745;
80% Identity: -