Basic Information

Insect: Harpalus rubripes
Gene Symbol: -
Assembly: GCA_963082715.1
Location: OY720460.1:24850549-24861612[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.47 1.2e+02 5.7 4.8 1 23 97 120 97 120 0.98

2 19 0.01 2.6 10.9 2.5 2 23 183 205 182 205 0.94

3 19 0.019 4.9 10.0 0.8 2 23 239 260 238 260 0.97

4 19 9.2 2.3e+03 1.6 1.2 1 23 266 288 266 289 0.94

5 19 0.85 2.1e+02 4.9 4.7 2 21 637 656 636 657 0.94

6 19 4.4 1.1e+03 2.6 0.8 1 23 954 976 954 976 0.89

7 19 0.059 15 8.5 0.6 1 23 1062 1084 1062 1084 0.98

8 19 0.026 6.5 9.7 0.8 2 23 1093 1114 1092 1114 0.97

9 19 0.087 22 8.0 2.1 1 23 1143 1165 1143 1165 0.96

10 19 0.0035 0.88 12.4 5.8 1 23 1172 1194 1172 1194 0.99

11 19 0.66 1.7e+02 5.2 1.5 1 23 1263 1285 1263 1285 0.98

12 19 0.031 7.8 9.4 1.8 1 23 1298 1320 1298 1320 0.97

13 19 2.1 5.4e+02 3.6 3.8 1 23 1392 1414 1392 1414 0.96

14 19 0.021 5.4 9.9 1.8 1 23 1420 1442 1420 1442 0.98

15 19 0.069 17 8.3 0.4 1 23 1515 1537 1515 1537 0.96

16 19 3.7e-06 0.00094 21.8 1.2 1 23 1543 1565 1543 1565 0.99

17 19 0.0073 1.9 11.4 2.6 1 23 1651 1673 1651 1673 0.97

18 19 0.00022 0.055 16.2 1.3 1 23 1679 1701 1679 1701 0.99

19 19 0.0026 0.65 12.8 2.9 1 23 1820 1842 1820 1842 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.47	1.2e+02	5.7	4.8	1	23	97	120	97	120	0.98
2	19	0.01	2.6	10.9	2.5	2	23	183	205	182	205	0.94
3	19	0.019	4.9	10.0	0.8	2	23	239	260	238	260	0.97
4	19	9.2	2.3e+03	1.6	1.2	1	23	266	288	266	289	0.94
5	19	0.85	2.1e+02	4.9	4.7	2	21	637	656	636	657	0.94
6	19	4.4	1.1e+03	2.6	0.8	1	23	954	976	954	976	0.89
7	19	0.059	15	8.5	0.6	1	23	1062	1084	1062	1084	0.98
8	19	0.026	6.5	9.7	0.8	2	23	1093	1114	1092	1114	0.97
9	19	0.087	22	8.0	2.1	1	23	1143	1165	1143	1165	0.96
10	19	0.0035	0.88	12.4	5.8	1	23	1172	1194	1172	1194	0.99
11	19	0.66	1.7e+02	5.2	1.5	1	23	1263	1285	1263	1285	0.98
12	19	0.031	7.8	9.4	1.8	1	23	1298	1320	1298	1320	0.97
13	19	2.1	5.4e+02	3.6	3.8	1	23	1392	1414	1392	1414	0.96
14	19	0.021	5.4	9.9	1.8	1	23	1420	1442	1420	1442	0.98
15	19	0.069	17	8.3	0.4	1	23	1515	1537	1515	1537	0.96
16	19	3.7e-06	0.00094	21.8	1.2	1	23	1543	1565	1543	1565	0.99
17	19	0.0073	1.9	11.4	2.6	1	23	1651	1673	1651	1673	0.97
18	19	0.00022	0.055	16.2	1.3	1	23	1679	1701	1679	1701	0.99
19	19	0.0026	0.65	12.8	2.9	1	23	1820	1842	1820	1842	0.98

Sequence Information

Coding Sequence: ATGACTTCACCGTCGATGGTACATCGATCGGGAGACACGTTAGTAGTGCGGAGCGTTGTCAGCGGTAATCAGTTGTTTGTAGACGACAACGAAGCAGAGCGGTACTCCGAGGACGCGtcggaagatatcgattattgtGACGAGTTATTCGATCCCGAcgataataaaaatttaccgGAGTGCAAAATCAGACGGAATTACTCATGCGTCAGCTGTCACTTCTTTACGCAAAATCCGAGACATTACTTGTATCACTTGCGGGATGTGCATAAAGAGAAAGTGAAAATATACGAGTGCTTAAACTGTTTGTACGCGTcaaaacattttcaaaagttgCATCGCCACATGAGGATGGTTCACAGCAATCTAGAAAATGCAGATGGTGTAGACCCTGCCCTACGACATAAGGTGCGGCGAAAACGGAAGCGACCTTCGAACGAGGAAGTGGTGGAACCGGAACTCAGCGCCGAGGAGCTAGAGCCCGATGAAGAAGATCTCCACCGAGGTGACATCATGGATGACGTAGTTTCCAAATCCACTGACTTGAAGTGTTCATTGTGTCCATTCACCACCAAGCATCAGGGACAACTAACGAAACACGAGAAACAAGAACATATTAAGACAAAGTTCTTCCGGTGTTCGAAGTGCAGTTACGTGACTCACATCAAAGCGCGATTCACGAAGCACGTCAAGTACCATTCCATGCCTATGATCAAGTGTGACTTGTGTGATTTCCGTACGCCTTACAAGTGGAACTTGGACCGCCATTACAAGAACCACAACGGGCACGGTGCATTTCGGTGTTCCGCGTGCAACTTTACAGCGGATATCAAGCAGAGCCTGACGGTGCATGAGATGAATCACCACGTACCTCCCGTGGGACAGGCAGCTGGATTAGGGGTGGGTCGACGCCGTAACAAAGTGGGCGCCAGCGACACCACAGCGGCCGAAGAGGCGGCGGCAGCCGCAGCGGCGCAGGCAGCCGTAACAACAGCCGAAGCACCCGCCAGCGTCTCCCCACCTAAGGATTTGACACAGGTTCTTACGCcagaaaaacaagaaattgtCAACGACGGAAACAAAAAAGGTcccaaaattaaatttacttataataaGAAAGCGAAAACTACAAATACACAAGAACAGAACGAAAGACATAATTTCGAAACAGATTTTATTCATCCTGATGACATAATTCATCATTCCAATGGCAACATTTATATAAAGAACAAGTGTAAGTTGTGCAACTACAAAACTGCTTGGGATACCGAGATGGCCCGACACGAGCAGAAAGTGCACAACATAATGCGAGACAATGGCCAGCAAAACAACGTTGCCGTGAAGAAAACTCCACGGCCAATCCCTAATTTGATTCCGATACAGAGTTCGCAGTCGTCGCAGGCGATGTCTGCCAGCTCGCTGTTGAAAATTCCTCACGTCCAAAATAGACCAGCCGGCGTTCACGGCCAGTTCCTTCCAAAGGCGGACGAATACTTAGCTCCAACCGACAACGTCATATCCCAGAAAGATCTAAACGATATGTGTGCCAAATCTGCTAACAGCTCCCTACGCGACTTTGCTTCACTGTTCGGTGATGACGTTGTTTTCGGGAATGAGAAGTCCGCTGTTGCAGCTTTTGATGTGCCAGAACCAAAAACATCGACTGCTTTACCTTCGCCTTTACCTACTGTCTCCGCGAACACCGCGCTCTTCAAGAAAAAGAACGCGTCGTTCTTCGACAAGCTCAAAGAGAAATTGATGACAGGAGAGAGTTGCAATCTCACTTGTAAATGGTGCGGACATGAATCCAAGTGCCTTTCGGAATCGGCTGGTCATCAGAAAACCTGCGGAAAGCAGCAGACAAATATTAGCAGTTTACCCGCTGCTGCGGCAACCACCAGTTCGACCAGGTGTCAACATTGCCGACAAAGATGTAAATCCAGTATCGATCTGCATAATCATTTACAGGTGTGCACGGAGGCTAACAAACAATTACACAAGGACACATCTAGATTAAACTATGAAAAACCGGATATTACTATTAAATTGGAAGATGAACATCATGCAGAAGATTCCCTTGAGCCACATCCGATGGAAAATGTCGTTTTTGTTTGGAATAATATAACTCCTTCTCCACAACCTCCTGATGTTGAAGAACAAAATTTATCCGCAGAACGAATAGAAGAAAATAGCGTCGATCTTTCAATCCGTGTGCAATCCCCAGAAAGTGAAGGTAGCCTTATGGAAAGCGAACCCGTTAATGGAAGTACCCCGGGGCCAGTAAAGATGCCAACGCATGGCAACAACATCGATATGGTCGCTGAAGGTCGCAGAGTTTTTAAATGTCCTCATTGTTCATTCTGGGCTACAACTGCTTCTCGTTTTCATGTCCATATAGTCGGCCACCTTAACAAAAAACCATTTGAATGTTCTTTATGCGCATACAGATCCAATTGGCGATGGGATATCACCAAACACATTCGCTTAAAATCAGTCAGAGACCCCGCACACGAGAAAGCGCGCGTCTTGATGACTGATGAAACCGGAAGAAGAAACTACTCAAAGTATAATAAGTATTTGACACAGTTACGACCGAATGATTCGACTCAGGAAAGCAATAGTTCTGGGCGGAGATCCAAGACGAATTTTGAAGCGAATCAGCGCAACGGTTCACCTGAAAATGTGAAACCGGTGATCGAGTTACCAAAATTGACCCGCGCGCCTACCAACACTGATTTCCAGACTGCTACTGGGAATAATCCTCTTCGACCACCACCTCCCCTAAAAGCTGCTAATGAAATGTTTTACCAAAGCGAGCAGAAGAAAAGGAGAACCAGTTCTGATTCTAAGAAGACCCTCTTCAAATGCAAGAAATGCAACTTTAGaGATGCGAACCGCGACAACATCTTGCTGCACGTGAAAGGCCACTATCGTCAAGAGAACAGCGTATCCGGTAATTCAGAAATTGATGAGGCAAGTGTCTCTAGGGGCCAGGCCCCATTTCGTTGTGGTCATTGCCACCAGGTATCAAATTGGAAGCATGTTATTCAGCGCCATTGTCGCCTGAAACATAGTGGCGACGTCCGTGTAGTAATCGGCGGTAAAAACGGAGCCTCCGATAAAATCGAAATCGACGACCAAACGGACGAACCAGACCATTTGGACGTCATCCAAAGCGGCGTTTTCAAATGCAAACAATGCCCATTTTCCACAAATCTTGAAGTGGAATTCAACGATCATATGGACATGCACATTCCAAAAAACACCACAACAGTCAAATGCTACTTTTGCCCCTATTTCGTCACACAAAAATTCGAACTCTTCGACCATCTCCGGCTTCACGGTGTTACCAACCCCGAAGATTACGTGAACCGGGCCATGCAAGGGCGAGAAATTGCATCGCCGACAGATGGATTATATAAGAGATACAAATGTGTTATGTGTCCATATGTCAGCAATAGTAAATCACAGTTTTTATACCATAAGCAGTTCCACAGACATCGAGGGGGGTCGTTTAAATGCGAATACTGCAGTTATAATGTCAGCAGACGACACTTATTGCACCAGCATATGAAAGTGCATGGAATCAACATTCCCACGCCGAAAGGTTCATTTAAAAGTGGATCAGACAGAGAAAGCGATGCAATGGATTCTGAAGATTTCGGAATGGACGAATTTGAAGAGGTTATGTCACCAATTGACACTCCAATTTTATCTTTAGAAGAACAAATACCTGCAGATGTGCCATTAGTTTGGGTGTCAAGAGACAGCAAGTTTTCCAAAATGTATAAATGTCGATACTGCCCCCACGTTAACGTTCGAAAAGTCAACATTCAAGAACACGAAAAAATGCATTCAAGAGACCCAAATATCCCTAGAAATGGTGACGAACATTCTTGTAACGAATGTTCTTATGTTTGTAACAATGCTGGTGTACTTTCGTCACATTTAAAAGTGCATCAAAATATTCAAGGACAAATTCATTGTTTAGTTGATACAGAAAAAACTGATGAAGAACAAATATCAGAACTTAGTAGATTATTAAATGTAACACCTCTAGAAACAAACTATTTGAGCGATGCAACAGACAGTACAaaaatagaagaattaaatGGAATTGAAGATGAAAAAAACATAGTAGATTTCACAATTTCCGATTTAgacaaaatgttatttttttgtgaacACTGCCCAGCAAGATTTTTACACGAAAAAGAATATAACATTCACATAAAATTCCATGGAATTCGATTATTTTATCGTTGTGATTATTGTACTTATGCTGCAAGACAAAAACCACATCTTTTATCGCATAATAAAGTTCATACGGATGAATACCAAGAAAAAACTAAAACTTATCAAACAGAATATCCAATTAGCGCTGATCACCAGCCACCAAGAACTGCCGTTATTGTAGATGCACCAGGAAACAACAATGGTTCAATTTGGGTCGTAATCGCAACAGGAGATAGAAAATGCATTTCTGATAACGAAATTTCAGTTGTTAAACATGAACCAAATAGCAGAAACAGcaataaaaattttgcttgtGAGAAATGTCCAGCGAGATTTTTTAAAGACGAGTTATTGCAGTATCATATGACACTGCACGGATGCAAAAATCCGtacaaatgtaaattttgtgATTATGCTGCAAGAACAAGCagtaatttacaaaaacatattCGAATCCACGAACAAGATGGACTGGAATTTATACCAGCCCCTATTCCCAAAATAGTAAATCCATCAACAATCATTCCTCTATCGGGAACGGATTTGTTTCAGCAAAAATCCGAAGCTGAAAAATTAAATTcggaaaatattcaaaatgaagTGTTACCAGAAATACCAATGCATGTAGATCAAGAATTTGGGGCGTTATCTAAGGGAAACCCAAAGTTTATTTATCCTACATATCTGAAAAATGGTCGAATGAAAGAGAAGAGGTATAAATGCCATAAATGCCCGTCAGCATTTGAAAAACGAGAACAGTACAAAGTTCATTTGTCCTTGCACGGGTCGAAACAAAGGTACAAATGCGAAAACTGTGATTATTCGGTTAAGTATTACGCAAATTATATTCAACATATTCGGAAACATCAGGTGAACGAAGATGCTTTAGCTGCCAGAAAATCAGAAATGGAAGACGAGGATGAAGACGAACCTACTGAAGAAATATCAGAAAATGTTGTGTCATCCCCTTTCAGCAAACTTGCaatcaaaactttaaattcATCATCAAAAAGAGGTCCATTAAAGTTGTCTGTAGCTGACAGACAAACATTGATGATACTTCAACAACGCAGAACTAGCAACGCAAGCAGTACAAAAGAATCAACaacagaagaaaaaaaatcattttggTGTCCGTATTGTCCGTATACGAACCACCGAAGAGACGCAGTCGACAACCATGTAAATAGACATATATGCGTTTCGGGGGTGCGTAGTAACTATACTTGTGATCATTGTGATTACACTGTTCCTCAGTCACATTTCTTGCGCGAACACGTTAAAATACACTTCGCAGGTCAAAAGAGTCATCAACCTGAAGGTTTCATGATTTGCAACAATTTACAGTTGGCAACGAAAGAAGTTGATGACTCCGAAAATGTAAATAGTGATGAAAGTGTCATATTCCAAGATTGTGGTGATTCTAAGTCGGACCAAACGAGGTTTAGGCCTTCGTTAGAGTCAGATCTAACTGCtgtgaataataataatgatgaaaaaatatatgttaaccCAGAGAATGGCGAATTTCTAGATAAAGATAGTGGTAAATGTGAAACCAAAGAATCCAAAAAGTCACTTTAG
Protein Sequence: MTSPSMVHRSGDTLVVRSVVSGNQLFVDDNEAERYSEDASEDIDYCDELFDPDDNKNLPECKIRRNYSCVSCHFFTQNPRHYLYHLRDVHKEKVKIYECLNCLYASKHFQKLHRHMRMVHSNLENADGVDPALRHKVRRKRKRPSNEEVVEPELSAEELEPDEEDLHRGDIMDDVVSKSTDLKCSLCPFTTKHQGQLTKHEKQEHIKTKFFRCSKCSYVTHIKARFTKHVKYHSMPMIKCDLCDFRTPYKWNLDRHYKNHNGHGAFRCSACNFTADIKQSLTVHEMNHHVPPVGQAAGLGVGRRRNKVGASDTTAAEEAAAAAAAQAAVTTAEAPASVSPPKDLTQVLTPEKQEIVNDGNKKGPKIKFTYNKKAKTTNTQEQNERHNFETDFIHPDDIIHHSNGNIYIKNKCKLCNYKTAWDTEMARHEQKVHNIMRDNGQQNNVAVKKTPRPIPNLIPIQSSQSSQAMSASSLLKIPHVQNRPAGVHGQFLPKADEYLAPTDNVISQKDLNDMCAKSANSSLRDFASLFGDDVVFGNEKSAVAAFDVPEPKTSTALPSPLPTVSANTALFKKKNASFFDKLKEKLMTGESCNLTCKWCGHESKCLSESAGHQKTCGKQQTNISSLPAAAATTSSTRCQHCRQRCKSSIDLHNHLQVCTEANKQLHKDTSRLNYEKPDITIKLEDEHHAEDSLEPHPMENVVFVWNNITPSPQPPDVEEQNLSAERIEENSVDLSIRVQSPESEGSLMESEPVNGSTPGPVKMPTHGNNIDMVAEGRRVFKCPHCSFWATTASRFHVHIVGHLNKKPFECSLCAYRSNWRWDITKHIRLKSVRDPAHEKARVLMTDETGRRNYSKYNKYLTQLRPNDSTQESNSSGRRSKTNFEANQRNGSPENVKPVIELPKLTRAPTNTDFQTATGNNPLRPPPPLKAANEMFYQSEQKKRRTSSDSKKTLFKCKKCNFRDANRDNILLHVKGHYRQENSVSGNSEIDEASVSRGQAPFRCGHCHQVSNWKHVIQRHCRLKHSGDVRVVIGGKNGASDKIEIDDQTDEPDHLDVIQSGVFKCKQCPFSTNLEVEFNDHMDMHIPKNTTTVKCYFCPYFVTQKFELFDHLRLHGVTNPEDYVNRAMQGREIASPTDGLYKRYKCVMCPYVSNSKSQFLYHKQFHRHRGGSFKCEYCSYNVSRRHLLHQHMKVHGINIPTPKGSFKSGSDRESDAMDSEDFGMDEFEEVMSPIDTPILSLEEQIPADVPLVWVSRDSKFSKMYKCRYCPHVNVRKVNIQEHEKMHSRDPNIPRNGDEHSCNECSYVCNNAGVLSSHLKVHQNIQGQIHCLVDTEKTDEEQISELSRLLNVTPLETNYLSDATDSTKIEELNGIEDEKNIVDFTISDLDKMLFFCEHCPARFLHEKEYNIHIKFHGIRLFYRCDYCTYAARQKPHLLSHNKVHTDEYQEKTKTYQTEYPISADHQPPRTAVIVDAPGNNNGSIWVVIATGDRKCISDNEISVVKHEPNSRNSNKNFACEKCPARFFKDELLQYHMTLHGCKNPYKCKFCDYAARTSSNLQKHIRIHEQDGLEFIPAPIPKIVNPSTIIPLSGTDLFQQKSEAEKLNSENIQNEVLPEIPMHVDQEFGALSKGNPKFIYPTYLKNGRMKEKRYKCHKCPSAFEKREQYKVHLSLHGSKQRYKCENCDYSVKYYANYIQHIRKHQVNEDALAARKSEMEDEDEDEPTEEISENVVSSPFSKLAIKTLNSSSKRGPLKLSVADRQTLMILQQRRTSNASSTKESTTEEKKSFWCPYCPYTNHRRDAVDNHVNRHICVSGVRSNYTCDHCDYTVPQSHFLREHVKIHFAGQKSHQPEGFMICNNLQLATKEVDDSENVNSDESVIFQDCGDSKSDQTRFRPSLESDLTAVNNNNDEKIYVNPENGEFLDKDSGKCETKESKKSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00769274;
90% Identity: iTF_00769274;
80% Identity: -