Basic Information

Insect: Harpalus rufipes
Gene Symbol: Sall1
Assembly: GCA_951394225.1
Location: OX596279.1:35127247-35130243[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.2 2.6e+02 4.2 2.0 1 23 528 550 528 550 0.92

2 14 0.46 1e+02 5.5 0.2 3 23 619 640 618 640 0.96

3 14 8.6e-05 0.019 17.2 2.4 1 23 648 670 648 670 0.97

4 14 0.0094 2.1 10.8 0.4 3 23 674 694 672 694 0.92

5 14 0.0012 0.26 13.7 4.9 1 23 700 722 700 722 0.98

6 14 5.4e-05 0.012 17.9 5.3 2 23 729 750 728 751 0.94

7 14 2 4.3e+02 3.5 3.9 5 23 764 782 763 782 0.97

8 14 0.00024 0.052 15.8 1.6 2 23 788 810 787 810 0.96

9 14 1.7 3.7e+02 3.7 0.2 2 23 826 846 825 846 0.94

10 14 1.7e-05 0.0038 19.4 1.0 1 20 852 871 852 874 0.94

11 14 0.00076 0.17 14.3 1.1 1 23 882 904 882 904 0.99

12 14 0.0057 1.2 11.5 6.9 1 23 910 932 910 932 0.97

13 14 1.8e-06 0.00039 22.5 3.7 1 23 938 960 938 960 0.98

14 14 8.9e-05 0.019 17.2 5.8 1 23 966 988 966 989 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.2	2.6e+02	4.2	2.0	1	23	528	550	528	550	0.92
2	14	0.46	1e+02	5.5	0.2	3	23	619	640	618	640	0.96
3	14	8.6e-05	0.019	17.2	2.4	1	23	648	670	648	670	0.97
4	14	0.0094	2.1	10.8	0.4	3	23	674	694	672	694	0.92
5	14	0.0012	0.26	13.7	4.9	1	23	700	722	700	722	0.98
6	14	5.4e-05	0.012	17.9	5.3	2	23	729	750	728	751	0.94
7	14	2	4.3e+02	3.5	3.9	5	23	764	782	763	782	0.97
8	14	0.00024	0.052	15.8	1.6	2	23	788	810	787	810	0.96
9	14	1.7	3.7e+02	3.7	0.2	2	23	826	846	825	846	0.94
10	14	1.7e-05	0.0038	19.4	1.0	1	20	852	871	852	874	0.94
11	14	0.00076	0.17	14.3	1.1	1	23	882	904	882	904	0.99
12	14	0.0057	1.2	11.5	6.9	1	23	910	932	910	932	0.97
13	14	1.8e-06	0.00039	22.5	3.7	1	23	938	960	938	960	0.98
14	14	8.9e-05	0.019	17.2	5.8	1	23	966	988	966	989	0.96

Sequence Information

Coding Sequence: ATGGAAACAATGGAAGGTTCAAACAACATAACGTGCCCTGTGTGCACTTTATACCTTCGCCCAGGTATGTCGATGGAGGACCATTTAGCTACACACCCCAAACAAAAAGTCATAGAGGCTTTACTGCGAGTTACTCAATCTACGGATAAAAGTAATGaatgtaataatattcaatcCCCAAAACCACAGCAACAAGGAATGCCTCAAATAGCACAACAAGGAATACCTTCAATAACACAACAACAAGGAACGCCGCAAATACCACAACAACAGGGAATTCCTCAAATACCACAACAACAAggaattcctcaaataacacaAGGAATGAGTATGCAAATGAATCAAATGCCCCAAAATCAATCGTTTATTTACCAACAGTTCACATCTACAACAGGCAATCAGTTTATTGGCGCCCCAATTAGCCCATTGAACAACTTAAATCAACAACAGTTCATTGCTATCCCTGCGTATATTCCACCCCAAATGGTCTCTCCTTGCTTTTATCAGCAACAACAACAATTGCAAATAGTCACAGCATCTTCAAATTTTCCATTTCTTCAGCGCCCACAAGAAATTCCTTCTATAACTCCAGCTACTTGTCAACCTACAGTTACAGAAATACAAGAACCAGTAACACCACCGAGATCTAGTGTTATTGCTGTGCCTGAAAAACGAACTCCTTCAACTAGTGAATTAATTAGTGAAAAATTAATAGCTCTTGAAATGAACAGTAAAGACAATGAATCAATTGTTATTCAAGATGAAGGGAAAAAGGAGGAAGAAGAGAAGGTTGAAGAATATACAATAAATGCGactgaaaaagaaataaaagaagatgAAATTAAAGATGAGGATGAATTAAGTAAAGCATGCCAGACTACACAAGAAAAACACTCCTTGTCGGATGACATTACTGCAGCGGACAGTAACGAAGGGGTGACAATATTACCCGATCCTGAACCTGATTTTGATAATAATCAGACGGAAATCGCACTATCCAACAATCTTGAAAACATTCACGAAAATATAGAATCTAACAACCAAAATCGGTCTAATAAGCCTATGATGCTAGATGTATCTACTCTAAATTTTATTCTCCCGAGTGATATACCTGAACAAGATGTGGAAATGGAAAAGGAGAATGATAAACAAGACGAATCAATTTTGATGAATATTGACGACGAATCTTTAAAAGACATAAACATGTCAGTAATTTCTCACAAATTAAGCGTACCAGATTTCGATGATGAGGACGACAGATTAGATGATGAATTGTCCCACCAAAGTTTAAACATCCGAGCAGATGAGAAAATGCCTGCAAGAGGAGAACTATCTGAACAAGAAAGTAACGGAGCGAGTGAAATTGGCTGGGGAAGTAGAATTTATCAGGAAGGAAGTTCTGGTATTTCAGCTTCTTACGACCTAGTAGCTCGAGAAAGCTGGGAAGCTTCAGATTGCTCAGACTCTGAAATGCCTCCTCTTCAAAGTAGAATTCAACCACCAATGGACTATAACGCTGAAGATGTTGATGAACCTGACCCTATATACACAGACGAAATAGATGAGAAAACTCCTTTTACTTTTGATTGTTCGACATGCGAGCAATCTTTCAGGTGTCCTAAAGAAAGAAGAGTTCATCAAGCGGAGCATCAAGCAGATGATGAGAATTCATCTAGTAGTAGTTCCAGTCGTTCCAGTAGTATAAGTGAAGATTCTCTTAGGACAAGTATTAAATGTaaagatttagaaaaattatcgGCAAATGAAGAAGATAAAAGTGAAATTAAAGCAGAACTTGCAGATGAAAAGCCATTAATAGAAGATGCAGACATAGAAGAAAAAGAACTTCTGTTGTGCAATATTTGTGGAGAATTACTACCTTCTATGAAAGACTTAACTATTCATAACAAAAAGCAACACAATATTggacaaaatcaaaattttatttgcaaaactTGCAAGGAATCATTTTATAGGCAAAGGgattatataaaacatttaaaaattcaccCATTAGAATGTATAATatgtagtaaattattttttaaacccGCGAATTTAAAAGTGCATCTTAAACGGCATTCTGGAGATAAACCGCATAAGTGTGAAATATGTCATAAATCATTTTTCGCTAAACAAAAATTACgagaacatttaaatatacacaATAATGTATCCCCAATTAAATGTACACAGTGTGATGAATCGTTTAAACGTTATTCTAATCTCATACAACACAGGAATCATcatcatttaaatattagaaagaaAACTAGAGACTATATTTGTTATTGCGGAGAAATATGTCATTccaaaagtaaatttaactggcACAAAGAAACACATGAAACAAAGCCTAAGTCTTGCATGTATTGTAACGAAAAGTTTATTCATATAGCTAGTTTAACTCGTCATATTCGCCGAGCCCACAACAATCATTACGTTCCAGATGAGAACAGAAAATGCGAGAACGTAGAATGCGATATATGTAAAGGAGTTTACTTAAAGTCAAGTTTAGATGCTCATTTACACATTCACACTGGGAAAAAGCCCTACACTTGCACTATTTGTAATAAAGAATTCACTACAAAATGGAATCTAAAACTCCATAAATGGATCCATGCTGCACCGAATTCAAAACCGTTTAAATGCGATGTCTGCCAAAACGCATATTTCAGGGAATCCGACTATAACTCTCATATGAATTCTCATCGTAGTGTAAAGCCGTATACATGCAATTATTGTGGGTGTAAGTTTATTCGTAAATATAACTGCATCAGACACGTTAAAGAACATGAGGAGAATAAGAATTTCTCATGTGAGGTTTGTAATAAAAGTTTCCATCGGTCGTATTATCTTAAAGAGCATATGAGAGTACATACGGGCGTTAGACCATATTCGTGCAATATCTGTGGGAAAACGTCCACAACTAAGTCAAATCAtaataaacatatgaaaattcatcaTGCTAGGGAACCTGTCACTACTGAAGGATAA
Protein Sequence: METMEGSNNITCPVCTLYLRPGMSMEDHLATHPKQKVIEALLRVTQSTDKSNECNNIQSPKPQQQGMPQIAQQGIPSITQQQGTPQIPQQQGIPQIPQQQGIPQITQGMSMQMNQMPQNQSFIYQQFTSTTGNQFIGAPISPLNNLNQQQFIAIPAYIPPQMVSPCFYQQQQQLQIVTASSNFPFLQRPQEIPSITPATCQPTVTEIQEPVTPPRSSVIAVPEKRTPSTSELISEKLIALEMNSKDNESIVIQDEGKKEEEEKVEEYTINATEKEIKEDEIKDEDELSKACQTTQEKHSLSDDITAADSNEGVTILPDPEPDFDNNQTEIALSNNLENIHENIESNNQNRSNKPMMLDVSTLNFILPSDIPEQDVEMEKENDKQDESILMNIDDESLKDINMSVISHKLSVPDFDDEDDRLDDELSHQSLNIRADEKMPARGELSEQESNGASEIGWGSRIYQEGSSGISASYDLVARESWEASDCSDSEMPPLQSRIQPPMDYNAEDVDEPDPIYTDEIDEKTPFTFDCSTCEQSFRCPKERRVHQAEHQADDENSSSSSSSRSSSISEDSLRTSIKCKDLEKLSANEEDKSEIKAELADEKPLIEDADIEEKELLLCNICGELLPSMKDLTIHNKKQHNIGQNQNFICKTCKESFYRQRDYIKHLKIHPLECIICSKLFFKPANLKVHLKRHSGDKPHKCEICHKSFFAKQKLREHLNIHNNVSPIKCTQCDESFKRYSNLIQHRNHHHLNIRKKTRDYICYCGEICHSKSKFNWHKETHETKPKSCMYCNEKFIHIASLTRHIRRAHNNHYVPDENRKCENVECDICKGVYLKSSLDAHLHIHTGKKPYTCTICNKEFTTKWNLKLHKWIHAAPNSKPFKCDVCQNAYFRESDYNSHMNSHRSVKPYTCNYCGCKFIRKYNCIRHVKEHEENKNFSCEVCNKSFHRSYYLKEHMRVHTGVRPYSCNICGKTSTTKSNHNKHMKIHHAREPVTTEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00767525;
90% Identity: iTF_01105041;
80% Identity: -